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一种不同寻常的双链起始非核糖体肽合成酶组装“真菌”二十内酯抗生素。

An unusual double chain-initiating nonribosomal peptide synthetase assembles 'fungal' icosalide antibiotics.

作者信息

Jenner Matthew, Jian Xinyun, Dashti Yousef, Masschelein Joleen, Hobson Christian, Roberts Douglas M, Jones Cerith, Harris Simon, Parkhill Julian, Raja Huzefa A, Oberlies Nicholas H, Pearce Cedric J, Mahenthiralingam Eshwar, Challis Gregory L

机构信息

Department of Chemistry , University of Warwick , Coventry CV4 7AL , UK . Email:

Warwick Integrative Synthetic Biology Centre , University of Warwick , Coventry CV4 7AL , UK.

出版信息

Chem Sci. 2019 Apr 25;10(21):5489-5494. doi: 10.1039/c8sc04897e. eCollection 2019 Jun 7.

DOI:10.1039/c8sc04897e
PMID:31293732
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6553374/
Abstract

is a multi-talented genus of Gram-negative bacteria, which in recent years has become increasingly recognised as a promising source of bioactive natural products. Metabolite profiling of BCC0238 showed that it produces the asymmetric lipopeptidiolide antibiotic icosalide A1, originally isolated from a fungus. Comparative bioinformatics analysis of several genome-sequenced isolates identified a gene encoding a nonribosomal peptide synthase (NRPS) with an unusual architecture that was predicted to be responsible for icosalide biosynthesis. Inactivation of this gene in BCC0238 abolished icosalide production. PCR analysis and sequencing of total DNA from the original fungal icosalide A1 producer revealed it has a strain associated with it that harbours an NRPS with an identical architecture to that responsible for icosalide A1 assembly in BCC0238. Sequence analysis of the icosalide NRPS indicated that it contains two chain-initiating condensation (C) domains. One of these is appended to the N-terminus of module 1 - a common architecture for NRPSs involved in lipopeptide assembly. The other is embedded in module 3, immediately downstream of a putative chain-elongating condensation domain. Analysis of the reactions catalysed by a tridomain construct from module 3 of the NRPS using intact protein mass spectrometry showed that the embedded C domain initiates assembly of a second lipopeptide chain, providing key insights into the mechanism for asymmetric diolide assembly.

摘要

是革兰氏阴性菌中的一个多能属,近年来越来越被认为是生物活性天然产物的一个有前景的来源。对BCC0238的代谢产物分析表明,它产生不对称脂肽二内酯抗生素伊可沙利德A1,最初是从一种真菌中分离出来的。对几个已进行基因组测序的菌株进行的比较生物信息学分析鉴定出一个编码非核糖体肽合成酶(NRPS)的基因,其结构不同寻常,预计负责伊可沙利德的生物合成。在BCC0238中使该基因失活消除了伊可沙利德的产生。对原始真菌伊可沙利德A1产生菌的总DNA进行PCR分析和测序,发现与其相关的一个菌株含有一个NRPS,其结构与负责BCC0238中伊可沙利德A1组装的NRPS相同。伊可沙利德NRPS的序列分析表明,它含有两个链起始缩合(C)结构域。其中一个附加在模块1的N端——这是参与脂肽组装的NRPS的常见结构。另一个嵌入在模块3中,紧接在一个假定的链延伸缩合结构域的下游。使用完整蛋白质质谱法对NRPS模块3的一个三结构域构建体催化的反应进行分析表明,嵌入的C结构域启动第二条脂肽链的组装,为不对称二内酯组装机制提供了关键见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/25d7/6553374/4e19d765b3ff/c8sc04897e-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/25d7/6553374/ac435ea8e756/c8sc04897e-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/25d7/6553374/0d06df9494af/c8sc04897e-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/25d7/6553374/4e19d765b3ff/c8sc04897e-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/25d7/6553374/ac435ea8e756/c8sc04897e-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/25d7/6553374/0d06df9494af/c8sc04897e-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/25d7/6553374/4e19d765b3ff/c8sc04897e-f3.jpg

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