UCIBIO, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516, Caparica, Portugal.
Biotechnol J. 2019 Nov;14(11):e1800607. doi: 10.1002/biot.201800607. Epub 2019 Aug 8.
Marine organisms and micro-organisms are a source of natural compounds with unique chemical features. These chemical properties are useful for the discovery of new functions and applications of marine natural products (MNPs). To extensively exploit the potential implementations of MNPs, they are gathered in chemical databases that allow their study and screening for applications of biotechnological interest. However, the classification of MNPs is currently poor in generic chemical databases. The present availability of free-access-focused MNP databases is scarce and the molecular diversity of these databases is still very low when compared to the paid-access ones. In this review paper, the current scenario of free-access MNP databases is presented as well as the hindrances involved in their development, mainly compound dereplication. Examples and opportunities for using freely accessible MNP databases in several important areas of biotechnology are also assessed. The scope of this paper is, as well, to notify the latent potential of these information sources for the discovery and development of new MNPs in biotechnology, and push future efforts to develop a public domain MNP database freely available for the scientific community.
海洋生物和微生物是具有独特化学特征的天然化合物的来源。这些化学特性有助于发现海洋天然产物 (MNPs) 的新功能和应用。为了广泛开发 MNPs 的潜在应用,将它们收集在化学数据库中,以便对其进行研究和筛选,以寻找具有生物技术应用价值的化合物。然而,目前在通用化学数据库中对 MNPs 的分类还不完善。目前,免费访问的 MNP 数据库的可用性很少,与付费访问的数据库相比,这些数据库的分子多样性仍然很低。在本文中,介绍了免费访问的 MNP 数据库的现状,以及它们在开发过程中遇到的障碍,主要是化合物去重。还评估了在生物技术的几个重要领域中使用免费访问的 MNP 数据库的示例和机会。本文的范围还在于通知这些信息源在发现和开发生物技术中的新型 MNPs 方面的潜在潜力,并推动未来的努力,开发一个免费提供给科学界的公共领域 MNP 数据库。