Department of Chemistry, Organic and Bioorganic Chemistry , Bielefeld University , Universitätsstraße 25 , 33615 Bielefeld , Germany.
Department of Chemistry , Middle East Technical University , 06800 Ankara , Turkey.
J Med Chem. 2019 Aug 22;62(16):7417-7430. doi: 10.1021/acs.jmedchem.9b00360. Epub 2019 Aug 5.
Halogenated l- or d-tryptophan obtained by biocatalytic halogenation was incorporated into RGD peptides together with a variety of alkyl or aryl boronic acids. Suzuki-Miyaura cross-coupling either in solution or on-resin results in side chain-to-tail-cyclized RGD peptides, for example, with biaryl moieties, providing a new dimension of structure-activity relationships. An array of RGD peptides differing in macrocycle size, the presence of d-amino acid, -methylation, or connectivity between the indole moiety and the boronic acid showed that, in particular, connectivity exhibits a major impact on affinities toward integrins, for example, αβ. Structure-activity relationship studies yielded peptides with affinities toward αβ in the low nanomolar range, good selectivity, and high plasma stability. Structural characteristics of representative molecules have been investigated by molecular dynamics simulations, which allowed understanding the observed activity differences.
经生物催化卤化得到的卤代 l-或 d-色氨酸与各种烷基或芳基硼酸一起被整合到 RGD 肽中。Suzuki-Miyaura 交叉偶联无论是在溶液中还是在树脂上都可以得到侧链到尾环化的 RGD 肽,例如带有联芳基部分,为结构-活性关系提供了一个新的维度。一系列 RGD 肽在大环尺寸、d-氨基酸的存在、-甲基化或吲哚部分和硼酸之间的连接性上存在差异,表明特别是连接性对与整合素(例如 αβ)的亲和力有重大影响。构效关系研究得到了对 αβ 具有低纳摩尔亲和力、良好选择性和高血浆稳定性的肽。通过分子动力学模拟研究了代表性分子的结构特征,这使得能够理解观察到的活性差异。