• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

氢键增强的卤键:化学和生物化学中的协同相互作用。

Hydrogen Bond Enhanced Halogen Bonds: A Synergistic Interaction in Chemistry and Biochemistry.

机构信息

Department of Chemistry & Biochemistry , University of Montana , Missoula , Montana 59812 , United States.

Department of Biochemistry & Molecular Biology , Colorado State University , Fort Collins , Colorado 80523 , United States.

出版信息

Acc Chem Res. 2019 Oct 15;52(10):2870-2880. doi: 10.1021/acs.accounts.9b00189. Epub 2019 Jul 18.

DOI:10.1021/acs.accounts.9b00189
PMID:31318520
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7328900/
Abstract

The halogen bond (XB) has become an important tool for molecular design in all areas of chemistry, including crystal and materials engineering and medicinal chemistry. Its similarity to the hydrogen bond (HB) makes the relationship between these interactions complex, at times competing against and other times orthogonal to each other. Recently, our two laboratories have independently reported and characterized a synergistic relationship, in which the XB is enhanced through direct intramolecular HBing to the electron-rich belt of the halogen. In one study, intramolecular HBing from an amine polarizes the iodopyridinium XB donors of a bidentate anion receptor. The resulting HB enhanced XB (or HBeXB) preorganizes and further augments the XB donors. Consequently, the affinity of the receptor for halogen anions was significantly increased. In a parallel study, a -chlorotyrosine was engineered into T4 lysozyme, resulting in a HBeXB that increased the thermal stability and activity of the enzyme at elevated temperatures. The crystal structure showed that the chlorine of the noncanonical amino acid formed a XB to the protein backbone, which augmented the HB of the wild-type enzyme. Calorimetric analysis resulted in an enthalpic contribution of this Cl-XB to the stability of the protein that was an order of magnitude greater than previously determined in biomolecules. Quantum mechanical (QM) calculations showed that rotating the hydroxyl group of the tyrosine to point toward rather than away from the halogen greatly increased its potential to serve as a XB donor, equivalent to what was observed experimentally. In sum, the two systems described here show that the HBeXB concept extends the range of interaction energies and geometries to be significantly greater than that of the XB alone. Additionally, surveys of structural databases indicate that the components for this interaction are already present in many existing molecular systems. The confluence of the independent studies from our two laboratories demonstrates the reach of the HBeXB across both chemistry and biochemistry and that intentional engineering of this enhanced interaction will extend the applications of XBs beyond these two initial examples.

摘要

卤键 (XB) 已成为化学各领域(包括晶体和材料工程以及药物化学)分子设计的重要工具。它与氢键 (HB) 的相似性使得这两种相互作用的关系变得复杂,有时相互竞争,有时相互正交。最近,我们两个实验室独立报道并描述了一种协同关系,其中 XB 通过直接分子内 HB 作用于富电子的卤带得到增强。在一项研究中,伯胺的分子内 HB 使双齿阴离子受体的碘吡啶鎓 XB 供体极化。由此产生的 HB 增强 XB(或 HBeXB)使 XB 供体预组织并进一步增强。因此,受体对卤阴离子的亲和力显著增加。在平行研究中,将 - 氯酪氨酸工程改造到 T4 溶菌酶中,形成 HBeXB,提高了酶在高温下的热稳定性和活性。晶体结构表明,非典型氨基酸的氯与蛋白质骨架形成 XB,增强了野生型酶的 HB。量热分析导致该非经典氨基酸的 Cl-XB 对蛋白质稳定性的焓贡献比以前在生物分子中确定的要大一个数量级。量子力学 (QM) 计算表明,将酪氨酸的羟基旋转指向而不是远离卤素,可大大增加其作为 XB 供体的潜力,这与实验观察到的结果相当。总之,这里描述的两个系统表明,HBeXB 概念扩展了相互作用能量和几何形状的范围,使其显著大于单独的 XB。此外,结构数据库的调查表明,这种相互作用的组成部分已经存在于许多现有分子系统中。我们两个实验室的独立研究表明,HBeXB 跨越化学和生物化学两个领域,并且这种增强相互作用的有意设计将使 XB 的应用超越这两个初始示例。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/7328900/8c0a84a1e7d9/nihms-1602831-f0009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/7328900/2bcda2d08830/nihms-1602831-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/7328900/c466516c53eb/nihms-1602831-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/7328900/e6633143dc85/nihms-1602831-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/7328900/a380b2900f2b/nihms-1602831-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/7328900/bfa1520dbc50/nihms-1602831-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/7328900/21df167a8d16/nihms-1602831-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/7328900/3fdc9473b803/nihms-1602831-f0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/7328900/cc94dc540bc4/nihms-1602831-f0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/7328900/8c0a84a1e7d9/nihms-1602831-f0009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/7328900/2bcda2d08830/nihms-1602831-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/7328900/c466516c53eb/nihms-1602831-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/7328900/e6633143dc85/nihms-1602831-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/7328900/a380b2900f2b/nihms-1602831-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/7328900/bfa1520dbc50/nihms-1602831-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/7328900/21df167a8d16/nihms-1602831-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/7328900/3fdc9473b803/nihms-1602831-f0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/7328900/cc94dc540bc4/nihms-1602831-f0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/7328900/8c0a84a1e7d9/nihms-1602831-f0009.jpg

相似文献

1
Hydrogen Bond Enhanced Halogen Bonds: A Synergistic Interaction in Chemistry and Biochemistry.氢键增强的卤键:化学和生物化学中的协同相互作用。
Acc Chem Res. 2019 Oct 15;52(10):2870-2880. doi: 10.1021/acs.accounts.9b00189. Epub 2019 Jul 18.
2
The intramolecular hydrogen bonded-halogen bond: a new strategy for preorganization and enhanced binding.分子内氢键连接的卤键:预组织和增强结合的新策略。
Chem Sci. 2018 Jun 21;9(26):5828-5836. doi: 10.1039/c8sc01973h. eCollection 2018 Jul 14.
3
The interplay between hydrogen and halogen bonding: substituent effects and their role in the hydrogen bond enhanced halogen bond.氢与卤键之间的相互作用:取代基效应及其在氢键增强卤键中的作用。
Chem Sci. 2023 Jul 21;14(33):8924-8935. doi: 10.1039/d3sc02348f. eCollection 2023 Aug 23.
4
Increasing Enzyme Stability and Activity through Hydrogen Bond-Enhanced Halogen Bonds.通过氢键增强的卤键提高酶的稳定性和活性。
Biochemistry. 2018 Jul 17;57(28):4135-4147. doi: 10.1021/acs.biochem.8b00603. Epub 2018 Jul 3.
5
Structure-Energy Relationships of Halogen Bonds in Proteins.蛋白质中卤键的结构-能量关系
Biochemistry. 2017 Jun 6;56(22):2794-2802. doi: 10.1021/acs.biochem.7b00022. Epub 2017 Apr 22.
6
Experimental investigation of halogen-bond hard-soft acid-base complementarity.卤素键硬软酸碱互补性的实验研究。
Acta Crystallogr B Struct Sci Cryst Eng Mater. 2017 Apr 1;73(Pt 2):203-209. doi: 10.1107/S2052520617001809. Epub 2017 Mar 29.
7
Relationships between hydrogen bonds and halogen bonds in biological systems.生物系统中氢键与卤键之间的关系。
Acta Crystallogr B Struct Sci Cryst Eng Mater. 2017 Apr 1;73(Pt 2):255-264. doi: 10.1107/S2052520617003109. Epub 2017 Mar 29.
8
Application of Halogen Bonding to Organocatalysis: A Theoretical Perspective.卤素键在有机催化中的应用:理论视角
Molecules. 2020 Feb 26;25(5):1045. doi: 10.3390/molecules25051045.
9
Examining a Transition from Supramolecular Halogen Bonding to Covalent Bonds: Topological Analysis of Electron Densities and Energies in the Complexes of Bromosubstituted Electrophiles.研究从超分子卤素键到共价键的转变:溴取代亲电试剂配合物中电子密度和能量的拓扑分析
ACS Omega. 2021 Sep 3;6(36):23588-23597. doi: 10.1021/acsomega.1c03779. eCollection 2021 Sep 14.
10
Asymmetric bifurcated halogen bonds.不对称分叉卤键。
Phys Chem Chem Phys. 2015 Mar 7;17(9):6440-50. doi: 10.1039/c4cp05532b.

引用本文的文献

1
Design of a halogen bond catalyzed DNA endonuclease.卤素键催化的DNA内切酶的设计
Proc Natl Acad Sci U S A. 2025 Apr 8;122(14):e2500099122. doi: 10.1073/pnas.2500099122. Epub 2025 Apr 1.
2
Amphoteric chalcogen-bonding and halogen-bonding rotaxanes for anion or cation recognition.用于阴离子或阳离子识别的两性硫族元素键合和卤键轮烷
Nat Chem. 2025 Mar;17(3):373-381. doi: 10.1038/s41557-025-01742-x. Epub 2025 Feb 20.
3
Unprecedented carbonic anhydrase inhibition mechanism: Targeting histidine 64 side chain through a halogen bond.

本文引用的文献

1
Cooperative Effects in Weak Interactions: Enhancement of Tetrel Bonds by Intramolecular Hydrogen Bonds.弱相互作用中的协同效应:分子内氢键增强四配位键。
Molecules. 2019 Jan 16;24(2):308. doi: 10.3390/molecules24020308.
2
Solvatochromism and fluorescence response of a halogen bonding anion receptor.一种卤素键合阴离子受体的溶剂化显色和荧光响应
New J Chem. 2018 Jul 7;42(13):10489-10492. doi: 10.1039/C8NJ00558C. Epub 2018 May 17.
3
The intramolecular hydrogen bonded-halogen bond: a new strategy for preorganization and enhanced binding.
前所未有的碳酸酐酶抑制机制:通过卤键靶向组氨酸64侧链。
Arch Pharm (Weinheim). 2025 Jan;358(1):e2400776. doi: 10.1002/ardp.202400776.
4
Unraveling the Strength and Nature of Se∙∙∙O Chalcogen Bonds: A Comparative Study of SeF and SeF Interactions with Oxygen-Bearing Lewis Bases.解析硒∙∙∙氧硫属元素键的强度和本质:SeF与含氧化路易斯碱相互作用的比较研究。 (注:原文中“Se∙∙∙O”和“SeF”表述似乎不太完整准确,可能影响理解,但按要求进行了翻译)
Molecules. 2024 Dec 5;29(23):5739. doi: 10.3390/molecules29235739.
5
Light-Up Fluorescence and Circularly Polarized Luminescence in Achiral Interlocked Framework via Adaptive Lone Pair-π Interaction Confinement.通过适应性孤对-π相互作用限制在非手性互锁框架中实现点亮荧光和圆偏振发光。
Adv Sci (Weinh). 2024 Oct;11(40):e2406890. doi: 10.1002/advs.202406890. Epub 2024 Sep 3.
6
Illuminating the Performance of Electron Withdrawing Groups in Halogen Bonding.揭示吸电子基团在卤键中的作用
Chemphyschem. 2024 Dec 16;25(24):e202400607. doi: 10.1002/cphc.202400607. Epub 2024 Nov 3.
7
Chalcogen-Bond-Assisted Formation of the N→C Dative Bonds in the Complexes between Chalcogenadiazoles/Chalcogenatriazoles and Fullerene C.硫属元素二唑/硫属元素三唑与富勒烯C形成的配合物中N→C配位键的硫属元素键辅助形成
Molecules. 2024 Jun 6;29(11):2685. doi: 10.3390/molecules29112685.
8
Benzoyl Valine Quasiracemates: Pairing CF Quasienantiomers with H to -Butyl.苯甲酰缬氨酸准外消旋体:将CF准对映体与H对叔丁基配对
Cryst Growth Des. 2024 Apr 15;24(9):3967-3976. doi: 10.1021/acs.cgd.4c00307. eCollection 2024 May 1.
9
In Situ X-Ray Techniques Unraveling Charge Distribution Induced by Halogen Bonds in Solvates of an Iodo-Substituted Squaraine Dye.原位X射线技术揭示碘代方酸菁染料溶剂化物中卤素键诱导的电荷分布
Adv Sci (Weinh). 2024 Jul;11(25):e2400661. doi: 10.1002/advs.202400661. Epub 2024 Apr 24.
10
Interplay of halogen bonding and solvation in protein-ligand binding.蛋白质-配体结合中卤键与溶剂化作用的相互影响
iScience. 2024 Mar 29;27(4):109636. doi: 10.1016/j.isci.2024.109636. eCollection 2024 Apr 19.
分子内氢键连接的卤键:预组织和增强结合的新策略。
Chem Sci. 2018 Jun 21;9(26):5828-5836. doi: 10.1039/c8sc01973h. eCollection 2018 Jul 14.
4
Increasing Enzyme Stability and Activity through Hydrogen Bond-Enhanced Halogen Bonds.通过氢键增强的卤键提高酶的稳定性和活性。
Biochemistry. 2018 Jul 17;57(28):4135-4147. doi: 10.1021/acs.biochem.8b00603. Epub 2018 Jul 3.
5
Halogen Bonding in Solution: Anion Recognition, Templated Self-Assembly, and Organocatalysis.溶液中的卤键:阴离子识别、模板自组装及有机催化
Angew Chem Int Ed Engl. 2018 May 22;57(21):6004-6016. doi: 10.1002/anie.201707986. Epub 2018 Apr 17.
6
Do Halogen-Hydrogen Bond Donor Interactions Dominate the Favorable Contribution of Halogens to Ligand-Protein Binding?卤素-氢键供体相互作用是否主导卤素对配体-蛋白结合的有利贡献?
J Phys Chem B. 2017 Jul 20;121(28):6813-6821. doi: 10.1021/acs.jpcb.7b04198. Epub 2017 Jul 11.
7
Halogen Bonding: A Powerful Tool for Modulation of Peptide Conformation.卤键:调节肽构象的有力工具。
Biochemistry. 2017 Jun 27;56(25):3265-3272. doi: 10.1021/acs.biochem.7b00429. Epub 2017 Jun 12.
8
Relationships between hydrogen bonds and halogen bonds in biological systems.生物系统中氢键与卤键之间的关系。
Acta Crystallogr B Struct Sci Cryst Eng Mater. 2017 Apr 1;73(Pt 2):255-264. doi: 10.1107/S2052520617003109. Epub 2017 Mar 29.
9
Experimental investigation of halogen-bond hard-soft acid-base complementarity.卤素键硬软酸碱互补性的实验研究。
Acta Crystallogr B Struct Sci Cryst Eng Mater. 2017 Apr 1;73(Pt 2):203-209. doi: 10.1107/S2052520617001809. Epub 2017 Mar 29.
10
Structure-Energy Relationships of Halogen Bonds in Proteins.蛋白质中卤键的结构-能量关系
Biochemistry. 2017 Jun 6;56(22):2794-2802. doi: 10.1021/acs.biochem.7b00022. Epub 2017 Apr 22.