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产 KPC 肠杆菌科细菌暴发与社区获得性产 KPC 分离株的关联:流行病学调查和全基因组测序分析。

An Outbreak of KPC-Producing Linked with an Index Case of Community-Acquired KPC-Producing Isolate: Epidemiological Investigation and Whole Genome Sequencing Analysis.

机构信息

Department of Internal Medicine, Yonsei University College of Medicine, Seoul, South Korea.

Department of Internal Medicine, Inje University Ilsan Paik Hospital, Goyang, South Korea.

出版信息

Microb Drug Resist. 2019 Dec;25(10):1475-1483. doi: 10.1089/mdr.2018.0475. Epub 2019 Jul 22.

Abstract

A hospital outbreak of e carbapenemase (KPC)-producing (KPN) linked with an index case of community-acquired infection occurred in an urban tertiary care hospital in Seoul, South Korea. Therefore, we performed an outbreak investigation and whole genome sequencing (WGS) analysis to trace the outbreak and investigate the molecular characteristics of the isolates. From October 2014 to January 2015, we identified a cluster of three patients in the neurosurgery ward with sputum cultures positive for carbapenem-resistant KPN. An epidemiological investigation, including pulsed-field gel electrophoresis analysis was performed to trace the origins of this outbreak. The index patient's infection was community acquired. Active surveillance cultures using perirectal swabbing from exposed patients, identified one additional patient with KPC-producing KPN colonization. WGS analyses using PacBio RSII instruments were performed for four linked isolates. WGS revealed a genetic linkage of the four isolates belonging to the same sequence type (ST307). All KPN isolates harbored conjugative resistance plasmids, which has carbapenemase genes contained within the Tn "a" isoform and other resistance genes. However, WGS showed only three isolates among four KPC-producing KPN were originated from a common origin. This report demonstrates the challenge that KPC-2-producing KPN with the conjugative resistance plasmid may spread not only in hospitals but also in community, and WGS can help to accurately characterize the outbreak.

摘要

韩国首尔一家城市三级保健医院发生了一起与社区获得性感染相关的产碳青霉烯酶(KPC) 肠杆菌科细菌(KPN)医院暴发事件。因此,我们进行了暴发调查和全基因组测序(WGS)分析,以追踪暴发并研究分离株的分子特征。 从 2014 年 10 月至 2015 年 1 月,我们在神经外科病房发现了三例痰培养产碳青霉烯类耐药 KPN 的患者,构成了一个聚集性病例。我们进行了包括脉冲场凝胶电泳分析在内的流行病学调查,以追踪此次暴发的源头。该起感染的源头是社区获得性感染。对暴露患者进行直肠拭子主动监测培养,发现了另一名产 KPC 肠杆菌科细菌定植患者。对四个关联分离株进行了 PacBio RSII 仪器 WGS 分析。WGS 显示四个分离株属于同一序列型(ST307),存在遗传关联性。所有 KPN 分离株均携带可转移的耐药质粒,其中包含 Tn“a” 型的碳青霉烯酶基因和其他耐药基因。然而,WGS 显示只有三个 KPC 产 KPN 分离株来自共同的起源。 本报告表明,具有可转移耐药质粒的 KPC-2 产 KPN 不仅可能在医院内传播,也可能在社区内传播,WGS 有助于准确描述暴发情况。

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