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基于九个长链非编码 RNA 预测胃癌患者的总生存期

Prediction of Overall Survival in Gastric Cancer Using a Nine-lncRNA.

机构信息

Emergency Department, Ningbo Yinzhou No. 2 Hospital, Ningbo, China.

Gastroenterology Department, Ningbo No. 9 Hospital, Ningbo, China.

出版信息

DNA Cell Biol. 2019 Sep;38(9):1005-1012. doi: 10.1089/dna.2019.4832. Epub 2019 Jul 23.

Abstract

Long noncoding RNA (lncRNA) was closely attached to various cancers according to previous studies. In this study we aimed to investigate an lncRNA signature with prognostic value of over survival (OS) outcomes of gastric cancer (GC). Profiles of mRNAs expression and clinical information of 381 GC tissues and 32 nontumor gastric tissues were downloaded from The Cancer Genome Atlas database. Comparison of various lncRNA expression between cancer tissue and normal tissue was made among these data. In the end, a nine-lncRNA signature was discovered using univariate and multivariate Cox regression analyses, with a prospect possibility of the OS in GC patients. Receiver operating characteristic (ROC) was used to evaluate the accuracy of survival model. The gene ontology and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analyses were used to predict the possible functions and pathways of these lncRNAs. Altogether 720 distinctively expressed lncRNAs were selected between GC and normal tissues. By univariate and multivariate Cox regression analyses, nine lncRNAs were eventually filtered to set a predictive model, distributing patients into high-risk and low-risk groups with extraordinary different OS. Area under the curve of the ROC curve for the nine-lncRNA signature's prediction of 5-year OS was 0.795. Further functional enrichment analyses indicated that these lncRNAs may be associated with biological processes such as protein binding, DNA replication, and cell cycle. Our study identified a nine-lncRNA signature, which could act as a potential prognostic biomarker in the prediction of GC patients' OS.

摘要

长链非编码 RNA(lncRNA)根据先前的研究与各种癌症密切相关。在这项研究中,我们旨在研究一个具有预后价值的 lncRNA 特征,以预测胃癌(GC)患者的总生存(OS)结局。从癌症基因组图谱数据库中下载了 381 例 GC 组织和 32 例非肿瘤胃组织的 mRNA 表达谱和临床信息。对这些数据中癌症组织和正常组织之间的各种 lncRNA 表达进行了比较。最后,使用单变量和多变量 Cox 回归分析发现了一个由 9 个 lncRNA 组成的特征,该特征具有 GC 患者 OS 的预测可能性。接收器操作特征(ROC)用于评估生存模型的准确性。基因本体论和京都基因与基因组百科全书通路富集分析用于预测这些 lncRNA 的可能功能和通路。GC 和正常组织之间总共选择了 720 个差异表达的 lncRNA。通过单变量和多变量 Cox 回归分析,最终筛选出 9 个 lncRNA 作为预测模型,将患者分为高风险和低风险组,OS 差异显著。该 9 个 lncRNA 特征预测 5 年 OS 的 ROC 曲线下面积为 0.795。进一步的功能富集分析表明,这些 lncRNA 可能与蛋白质结合、DNA 复制和细胞周期等生物学过程有关。我们的研究确定了一个由 9 个 lncRNA 组成的特征,可作为预测 GC 患者 OS 的潜在预后生物标志物。

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