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一种提高杂交捕获测序靶向效率的新方法。

A novel approach to improving hybrid capture sequencing targeting efficiency.

机构信息

Department of R&D, Decode Genomics Incorporation, Nanjing, 210000, China; Department of R&D, AGCU ScienTech Incorporation, Wuxi, 214174, China.

Department of R&D, Decode Genomics Incorporation, Nanjing, 210000, China.

出版信息

Mol Cell Probes. 2019 Aug;46:101424. doi: 10.1016/j.mcp.2019.101424. Epub 2019 Jul 20.

DOI:10.1016/j.mcp.2019.101424
PMID:31336168
Abstract

At present, approaches to hybrid capture sequencing have many limitations, from their significant complexity and labor requirements, to their low enrichment efficiency, resulting in their limited utilization. In an effort to overcome these drawbacks, we have developed a novel method that relied upon direct genomic DNA hybridization and single-stranded DNA library preparation. Using this novel protocol, we were able to achieve a targeting efficiency as high as 75%, and we found this approach to overall be an efficient and simple approach to DNA library construction.

摘要

目前,杂交捕获测序方法存在许多局限性,从其显著的复杂性和劳动力需求,到其低富集效率,导致其利用受限。为了克服这些缺点,我们开发了一种新的方法,该方法依赖于直接基因组 DNA 杂交和单链 DNA 文库制备。使用这种新方案,我们能够实现高达 75%的靶向效率,并且我们发现这种方法总体上是一种高效且简单的 DNA 文库构建方法。

相似文献

1
A novel approach to improving hybrid capture sequencing targeting efficiency.一种提高杂交捕获测序靶向效率的新方法。
Mol Cell Probes. 2019 Aug;46:101424. doi: 10.1016/j.mcp.2019.101424. Epub 2019 Jul 20.
2
NEBNext Direct: A Novel, Rapid, Hybridization-Based Approach for the Capture and Library Conversion of Genomic Regions of Interest.NEBNext Direct:一种用于捕获和文库转换目标基因组区域的新型、快速、基于杂交的方法。
Curr Protoc Mol Biol. 2017 Jul 5;119:7.30.1-7.30.24. doi: 10.1002/cpmb.39.
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Whole-Genome Capture of Ancient DNA Using Homemade Baits.使用自制诱饵对古代DNA进行全基因组捕获
Methods Mol Biol. 2019;1963:93-105. doi: 10.1007/978-1-4939-9176-1_11.
4
[Establishment of target genomic DNA capturing system for next generation sequencing].[用于下一代测序的目标基因组DNA捕获系统的建立]
Yi Chuan. 2010 Dec;32(12):1296-303.
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Capture Hybridization of Long-Range DNA Fragments for High-Throughput Sequencing.用于高通量测序的长片段DNA捕获杂交
Methods Mol Biol. 2018;1754:29-44. doi: 10.1007/978-1-4939-7717-8_3.
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Hybridization Capture of Ancient DNA Using RNA Baits.使用RNA诱饵对古代DNA进行杂交捕获
Methods Mol Biol. 2019;1963:121-128. doi: 10.1007/978-1-4939-9176-1_13.
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Library construction for ancient genomics: single strand or double strand?古代基因组学的文库构建:单链还是双链?
Biotechniques. 2014 Jun 1;56(6):289-90, 292-6, 298, passim. doi: 10.2144/000114176. eCollection 2014 Jun.
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Pulling out the 1%: whole-genome capture for the targeted enrichment of ancient DNA sequencing libraries.取出 1%:全基因组捕获用于目标富集古 DNA 测序文库。
Am J Hum Genet. 2013 Nov 7;93(5):852-64. doi: 10.1016/j.ajhg.2013.10.002. Epub 2013 Oct 25.
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Application of Solid-State Capture for the Retrieval of Small-to-Medium Sized Target Loci from Ancient DNA.固态捕获技术在从古DNA中检索中小型目标基因座中的应用。
Methods Mol Biol. 2019;1963:129-139. doi: 10.1007/978-1-4939-9176-1_14.
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Target enrichment via DNA hybridization capture.通过DNA杂交捕获进行目标富集。
Methods Mol Biol. 2012;840:177-88. doi: 10.1007/978-1-61779-516-9_21.

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Novel CRISPR-based sequence specific enrichment methods for target loci and single base mutations.基于新型 CRISPR 的靶基因和单碱基突变序列特异性富集方法。
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