• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

对一小部分意大利乳腺癌/卵巢癌患者进行下一代测序检测:新的致病性和未知临床意义的变异体。

and Testing through Next Generation Sequencing in a Small Cohort of Italian Breast/Ovarian Cancer Patients: Novel Pathogenic and Unknown Clinical Significance Variants.

机构信息

Dipartimento Scienze di Laboratorio e Infettivologiche, Fondazione Policlinico Universitario Agostino Gemelli, IRCCS, 00168 Rome, Italy.

Ambulatorio Genetica Medica e Citogenetica Clinica, Poliambulatorio Sant'Anna, ASL Roma 1, Via Garigliano 55, 00198 Rome, Italy.

出版信息

Int J Mol Sci. 2019 Jul 12;20(14):3442. doi: 10.3390/ijms20143442.

DOI:10.3390/ijms20143442
PMID:31336956
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6678297/
Abstract

The aim of this report is to describe results of and Next Generation Sequencing Analysis (NGS) analysis in 132 selected Italian patients with breast/ovarian cancer. A NGS pipeline with a reliable Copy Number Variation (CNV) prediction algorithm was applied. In addition, VarSome and Priors V2.0 Software were employed for in silico analysis of novel missense variants. A total of 37 and pathogenic variants were found in 34 unrelated subjects with a frequency of positive patients of 25.7% (34/132). Twenty-four deleterious variants were detected in (representing the 64.9% of all identified pathogenic defects) and thirteen (35.1% of all identified pathogenic variants) in gene. The percentage of patients carrying a variant of unknown significance (VUS) was 7.5% (10/132). In addition, seven novel variants (five in and two in gene), never previously reported, were identified. Our approach represents a robust and easy-to-use method for full screening. However, a consistent number of our high-risk families still remained without a satisfying answer. Necessarily, further collective efforts must be directed to a definitive classification of VUSs. The future auspice is that the use of multi-gene panel and more advanced screenings, such as whole exome sequencing and/or RNA seq, in routine diagnostics increases the detection rate.

摘要

本报告旨在描述对 132 名意大利乳腺癌/卵巢癌患者进行的 和 下一代测序分析 (NGS) 分析的结果。应用了具有可靠拷贝数变异 (CNV) 预测算法的 NGS 管道。此外,还使用了 VarSome 和 Priors V2.0 软件对新的错义变异进行了计算机分析。在 34 名无亲缘关系的受试者中发现了 37 个 和 致病性变异,阳性患者的频率为 25.7%(34/132)。在 (代表所有鉴定出的致病性缺陷的 64.9%)中检测到 24 个有害变异,在 基因中检测到 13 个(所有鉴定出的致病性变异的 35.1%)。携带意义不明的变异(VUS)的患者比例为 7.5%(10/132)。此外,还鉴定了七个从未报道过的新变异(五个在 基因,两个在 基因)。我们的方法代表了一种强大且易于使用的 全面筛选方法。然而,我们的许多高风险家族仍然没有得到令人满意的答案。必要时,必须进一步共同努力,对 VUS 进行明确分类。未来的前景是,多基因面板和更先进的筛查(如全外显子组测序和/或 RNA seq)在常规诊断中的应用会提高检测率。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf46/6678297/ae3f4c5fe06a/ijms-20-03442-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf46/6678297/480279084288/ijms-20-03442-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf46/6678297/b73ff85a76be/ijms-20-03442-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf46/6678297/13f8b39f5c8c/ijms-20-03442-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf46/6678297/4c027f84b72c/ijms-20-03442-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf46/6678297/4c2736273e20/ijms-20-03442-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf46/6678297/297c2f315d0b/ijms-20-03442-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf46/6678297/ae3f4c5fe06a/ijms-20-03442-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf46/6678297/480279084288/ijms-20-03442-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf46/6678297/b73ff85a76be/ijms-20-03442-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf46/6678297/13f8b39f5c8c/ijms-20-03442-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf46/6678297/4c027f84b72c/ijms-20-03442-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf46/6678297/4c2736273e20/ijms-20-03442-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf46/6678297/297c2f315d0b/ijms-20-03442-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf46/6678297/ae3f4c5fe06a/ijms-20-03442-g007.jpg

相似文献

1
and Testing through Next Generation Sequencing in a Small Cohort of Italian Breast/Ovarian Cancer Patients: Novel Pathogenic and Unknown Clinical Significance Variants.对一小部分意大利乳腺癌/卵巢癌患者进行下一代测序检测:新的致病性和未知临床意义的变异体。
Int J Mol Sci. 2019 Jul 12;20(14):3442. doi: 10.3390/ijms20143442.
2
Screening for BRCA1, BRCA2, CHEK2, PALB2, BRIP1, RAD50, and CDH1 mutations in high-risk Finnish BRCA1/2-founder mutation-negative breast and/or ovarian cancer individuals.在高危芬兰 BRCA1/2 种系突变阴性的乳腺癌和/或卵巢癌个体中筛查 BRCA1、BRCA2、CHEK2、PALB2、BRIP1、RAD50 和 CDH1 突变。
Breast Cancer Res. 2011 Feb 28;13(1):R20. doi: 10.1186/bcr2832.
3
Next-Generation Sequencing-Based Detection of Germline Copy Number Variations in BRCA1/BRCA2: Validation of a One-Step Diagnostic Workflow.基于新一代测序的 BRCA1/BRCA2 种系拷贝数变异的检测:一步法诊断工作流程的验证。
J Mol Diagn. 2017 Nov;19(6):809-816. doi: 10.1016/j.jmoldx.2017.07.003. Epub 2017 Aug 17.
4
BRCA1 and BRCA2 genetic testing in Italian breast and/or ovarian cancer families: mutation spectrum and prevalence and analysis of mutation prediction models.意大利乳腺癌和/或卵巢癌家族中的BRCA1和BRCA2基因检测:突变谱、患病率及突变预测模型分析
Ann Oncol. 2006 Jun;17 Suppl 7:vii34-40. doi: 10.1093/annonc/mdl947.
5
BRCA1 and BRCA2 unclassified variants and missense polymorphisms in Algerian breast/ovarian cancer families.BRCA1 和 BRCA2 未分类变异体及错义多态性在阿尔及利亚乳腺癌/卵巢癌家族中的研究。
Dis Markers. 2012;32(6):343-53. doi: 10.3233/DMA-2012-0893.
6
Novel BRCA1 and BRCA2 Tumor Test as Basis for Treatment Decisions and Referral for Genetic Counselling of Patients with Ovarian Carcinomas.新型BRCA1和BRCA2肿瘤检测作为卵巢癌患者治疗决策及转介进行遗传咨询的依据。
Hum Mutat. 2017 Feb;38(2):226-235. doi: 10.1002/humu.23137. Epub 2016 Nov 9.
7
Identification of twenty-nine novel germline unclassified variants of BRCA1 and BRCA2 genes in 1400 Italian individuals.在 1400 名意大利个体中鉴定出 BRCA1 和 BRCA2 基因的 29 种新型胚系未分类变异。
Breast. 2017 Dec;36:74-78. doi: 10.1016/j.breast.2017.09.007. Epub 2017 Oct 8.
8
New recurrent BRCA1/2 mutations in Polish patients with familial breast/ovarian cancer detected by next generation sequencing.通过下一代测序在波兰家族性乳腺癌/卵巢癌患者中检测到的新的BRCA1/2复发性突变。
BMC Med Genomics. 2015 May 7;8:19. doi: 10.1186/s12920-015-0092-2.
9
Comprehensive mutation detection of BRCA1/2 genes reveals large genomic rearrangements contribute to hereditary breast and ovarian cancer in Chinese women.全面检测 BRCA1/2 基因突变揭示大片段基因重排与中国遗传性乳腺癌和卵巢癌相关。
BMC Cancer. 2019 Jun 7;19(1):551. doi: 10.1186/s12885-019-5765-3.
10
Frequency of mutations in BRCA genes and other candidate genes in high-risk probands or probands with breast or ovarian cancer in the Czech Republic.在捷克共和国,高危先证者或有乳腺癌或卵巢癌先证者的 BRCA 基因和其他候选基因的突变频率。
Mol Biol Rep. 2020 Apr;47(4):2763-2769. doi: 10.1007/s11033-020-05378-7. Epub 2020 Mar 16.

引用本文的文献

1
Case Report: Clinical impact of and vs. and germline double heterozygosity in ovarian cancer: a comparative case study.病例报告:卵巢癌中[具体基因1]和[具体基因2]与[另外两个具体基因]种系双杂合性的临床影响:一项对比病例研究。
Front Oncol. 2025 Jul 24;15:1614373. doi: 10.3389/fonc.2025.1614373. eCollection 2025.
2
Next-Generation Sequencing in Oncology-A Guiding Compass for Targeted Therapy and Emerging Applications.肿瘤学中的下一代测序——靶向治疗及新兴应用的指南
Int J Mol Sci. 2025 Mar 28;26(7):3123. doi: 10.3390/ijms26073123.
3
Breast Cancer High-Penetrance Genes BRCA1 and BRCA2 Mutations Using Next-Generation Sequencing Among Iraqi Kurdish Women.

本文引用的文献

1
Usefulness and Limitations of Comprehensive Characterization of mRNA Splicing Profiles in the Definition of the Clinical Relevance of Variants of Uncertain Significance.在不确定意义变异体临床相关性定义中mRNA剪接谱全面表征的实用性与局限性
Cancers (Basel). 2019 Mar 1;11(3):295. doi: 10.3390/cancers11030295.
2
VarSome: the human genomic variant search engine.VarSome:人类基因组变异搜索引擎。
Bioinformatics. 2019 Jun 1;35(11):1978-1980. doi: 10.1093/bioinformatics/bty897.
3
Additional molecular and clinical evidence open the way to definitive IARC classification of the BRCA1 c.5332G > A (p.Asp1778Asn) variant.
伊拉克库尔德女性中使用下一代测序技术检测乳腺癌高穿透性基因BRCA1和BRCA2突变
Cureus. 2024 Jun 11;16(6):e62160. doi: 10.7759/cureus.62160. eCollection 2024 Jun.
4
Multi-gene panel testing increases germline predisposing mutations' detection in a cohort of breast/ovarian cancer patients from Southern Italy.多基因检测panel增加了意大利南部乳腺癌/卵巢癌患者队列中种系易感突变的检测率。
Front Med (Lausanne). 2022 Aug 11;9:894358. doi: 10.3389/fmed.2022.894358. eCollection 2022.
5
Evaluation of a Four-Gene Panel for Hereditary Cancer Risk Assessment.评估四种基因组合用于遗传性癌症风险评估。
Genes (Basel). 2022 Apr 13;13(4):682. doi: 10.3390/genes13040682.
6
Five Italian Families with Two Mutations in Genes.五个意大利家系携带两个基因的突变。
Genes (Basel). 2020 Dec 3;11(12):1451. doi: 10.3390/genes11121451.
7
Spectrum of Germline and Variants Identified in 2351 Ovarian and Breast Cancer Patients Referring to a Reference Cancer Hospital of Rome.在罗马一家癌症专科医院就诊的2351例卵巢癌和乳腺癌患者中鉴定出的种系和变异谱。
Cancers (Basel). 2020 May 19;12(5):1286. doi: 10.3390/cancers12051286.
更多的分子和临床证据为国际癌症研究机构(IARC)对BRCA1基因c.5332G > A(p.Asp1778Asn)变异进行最终分类开辟了道路。
Clin Biochem. 2019 Jan;63:54-58. doi: 10.1016/j.clinbiochem.2018.10.004. Epub 2018 Oct 10.
4
Preliminary molecular evidence associating a novel BRCA1 synonymous variant with hereditary ovarian cancer syndrome.将一种新型BRCA1同义变异与遗传性卵巢癌综合征相关联的初步分子证据。
Hum Genome Var. 2018 Apr 20;5:2. doi: 10.1038/s41439-018-0003-0. eCollection 2018.
5
Performance of in silico prediction tools for the classification of rare BRCA1/2 missense variants in clinical diagnostics.用于临床诊断中罕见BRCA1/2错义变异分类的计算机预测工具的性能
BMC Med Genomics. 2018 Mar 27;11(1):35. doi: 10.1186/s12920-018-0353-y.
6
Clinical testing of and : a worldwide snapshot of technological practices.[具体内容]与[具体内容]的临床试验:全球技术实践概况。 (你提供的原文不完整,这里只是根据格式要求给出大致翻译框架,你可补充完整原文后继续让我翻译)
NPJ Genom Med. 2018 Feb 15;3:7. doi: 10.1038/s41525-018-0046-7. eCollection 2018.
7
A comprehensive BRCA1/2 NGS pipeline for an immediate Copy Number Variation (CNV) detection in breast and ovarian cancer molecular diagnosis.一种用于乳腺癌和卵巢癌分子诊断中即时检测拷贝数变异(CNV)的综合BRCA1/2二代测序流程。
Clin Chim Acta. 2018 May;480:173-179. doi: 10.1016/j.cca.2018.02.012. Epub 2018 Feb 16.
8
Mutational spectrum in a worldwide study of 29,700 families with BRCA1 or BRCA2 mutations.BRCA1 或 BRCA2 突变 29700 个家系的世界性研究中的突变谱。
Hum Mutat. 2018 May;39(5):593-620. doi: 10.1002/humu.23406. Epub 2018 Mar 12.
9
Olaparib tablets as maintenance therapy in patients with platinum-sensitive, relapsed ovarian cancer and a BRCA1/2 mutation (SOLO2/ENGOT-Ov21): a double-blind, randomised, placebo-controlled, phase 3 trial.奥拉帕利片作为 BRCA1/2 突变的铂敏感复发性卵巢癌患者的维持治疗(SOLO2/ENGOT-Ov21):一项双盲、随机、安慰剂对照、III 期临床试验。
Lancet Oncol. 2017 Sep;18(9):1274-1284. doi: 10.1016/S1470-2045(17)30469-2. Epub 2017 Jul 25.
10
BRCA mutational status, initial disease presentation, and clinical outcome in high-grade serous advanced ovarian cancer: a multicenter study.高级别浆液性晚期卵巢癌的BRCA突变状态、初始疾病表现及临床结局:一项多中心研究
Am J Obstet Gynecol. 2017 Sep;217(3):334.e1-334.e9. doi: 10.1016/j.ajog.2017.05.036. Epub 2017 May 23.