来自临床和环境来源的10株菌株的全基因组序列草图
Draft Whole-Genome Sequences of 10 Strains from Clinical and Environmental Sources.
作者信息
Gray Katie, Green Luke R, Chaudhuri Roy R, Shaw Jonathan G
机构信息
Department of Infection, Immunity and Cardiovascular Disease, University of Sheffield, Sheffield, United Kingdom.
Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, United Kingdom.
出版信息
Microbiol Resour Announc. 2019 Jul 25;8(30):e00170-19. doi: 10.1128/MRA.00170-19.
Abstract
bacteria are able to cause disease in a wide range of animals from humans to fish. In this article, we report the draft whole-genome sequences of 10 strains from clinical and environmental sources. These genome sequences will provide a repository of information for further investigations into the pathogenicity of this enigmatic pathogen.
摘要
细菌能够在从人类到鱼类等广泛的动物中引发疾病。在本文中，我们报告了来自临床和环境来源的10个菌株的全基因组序列草图。这些基因组序列将为进一步研究这种神秘病原体的致病性提供信息库。
相似文献
1
Draft Whole-Genome Sequences of 10 Strains from Clinical and Environmental Sources.来自临床和环境来源的10株菌株的全基因组序列草图
Microbiol Resour Announc. 2019 Jul 25;8(30):e00170-19. doi: 10.1128/MRA.00170-19.
2
An Update on the Genus : Taxonomy, Epidemiology, and Pathogenicity.属的最新情况：分类学、流行病学及致病性
Microorganisms. 2020 Jan 17;8(1):129. doi: 10.3390/microorganisms8010129.
3
Markers of pathogenicity islands in strains of Aeromonas species of clinical and environmental origin.临床和环境来源的气单胞菌属菌株中致病岛的标志物。
Indian J Med Microbiol. 2012 Oct-Dec;30(4):467-9. doi: 10.4103/0255-0857.103772.
4
The genome of Aeromonas salmonicida subsp. salmonicida A449: insights into the evolution of a fish pathogen.杀鲑气单胞菌杀鲑亚种A449的基因组：对一种鱼类病原体进化的见解。
BMC Genomics. 2008 Sep 18;9:427. doi: 10.1186/1471-2164-9-427.
5
Draft Genome Sequence of Aeromonas sobria Strain CHT-30, Isolated from a Diseased Rainbow Trout (Oncorhynchus mykiss) in Peru.从秘鲁一条患病虹鳟鱼（Oncorhynchus mykiss）中分离出的温和气单胞菌CHT-30菌株的基因组序列草图
Microbiol Resour Announc. 2020 Aug 13;9(33):e00110-20. doi: 10.1128/MRA.00110-20.
6
Draft Genome Sequences of Four Aeromonas salmonicida subsp. achromogenes Strains, 23051, 23053, 23055, and 23056, Isolated from Senegalese Sole ().从塞内加尔鳎中分离出的4株无色产气单胞菌亚种菌株23051、23053、23055和23056的基因组序列草图
Microbiol Resour Announc. 2019 Aug 15;8(33):e00631-19. doi: 10.1128/MRA.00631-19.
7
Draft genome sequence of a multidrug-resistant Aeromonas hydrophila ST508 strain carrying rmtD and bla isolated from a bloodstream infection.一株携带 rmtD 和 bla 的多药耐药嗜水气单胞菌 ST508 菌株的基因组草图，该菌从血流感染中分离得到。
J Glob Antimicrob Resist. 2017 Sep;10:289-290. doi: 10.1016/j.jgar.2017.07.007. Epub 2017 Jul 21.
8
Genome sequencing and annotation of strain Ae52, a multidrug-resistant isolate from septicaemic gold fish () in Sri Lanka.来自斯里兰卡患败血症金鱼的多重耐药菌株Ae52的基因组测序与注释
Genom Data. 2016 Nov 10;11:46-48. doi: 10.1016/j.gdata.2016.11.011. eCollection 2017 Mar.
9
Draft Genome Sequence of Fish Pathogen Aeromonas bestiarum GA97-22.鱼类病原菌嗜水气单胞菌GA97-22的基因组序列草图
Genome Announc. 2018 Jun 14;6(24):e00524-18. doi: 10.1128/genomeA.00524-18.
10
Draft Genome Sequences of Three Aeromonas hydrophila Isolates from Catfish and Tilapia.来自鲶鱼和罗非鱼的三株嗜水气单胞菌分离株的基因组序列草图
Genome Announc. 2017 Jan 19;5(3):e01509-16. doi: 10.1128/genomeA.01509-16.
引用本文的文献
1
Heterogeneous glycosylation and methylation of the Aeromonas caviae flagellin.气单胞菌鞭毛蛋白的不均一糖基化和甲基化。
Microbiologyopen. 2022 Aug;11(4):e1306. doi: 10.1002/mbo3.1306.
本文引用的文献
1
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
2
Prokka: rapid prokaryotic genome annotation.Prokka：快速的原核生物基因组注释。
Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
3
Maf-dependent bacterial flagellin glycosylation occurs before chaperone binding and flagellar T3SS export.Maf 依赖性细菌鞭毛蛋白糖基化发生在伴侣蛋白结合和鞭毛 T3SS 输出之前。
Mol Microbiol. 2014 Apr;92(2):258-72. doi: 10.1111/mmi.12549. Epub 2014 Mar 4.
4
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
5
Bundle-forming pilus locus of Aeromonas veronii bv. Sobria.气单胞菌 veronii bv. Sobria 的菌毛束形成基因座。
Infect Immun. 2012 Apr;80(4):1351-60. doi: 10.1128/IAI.06304-11. Epub 2012 Feb 6.
6
Aeromonas spp. clinical microbiology and disease.气单胞菌属的临床微生物学与疾病
J Infect. 2011 Feb;62(2):109-18. doi: 10.1016/j.jinf.2010.12.003. Epub 2010 Dec 14.
7
The genus Aeromonas: taxonomy, pathogenicity, and infection.气单胞菌属：分类、致病性和感染。
Clin Microbiol Rev. 2010 Jan;23(1):35-73. doi: 10.1128/CMR.00039-09.
8
An Aeromonas caviae genomic island is required for both O-antigen lipopolysaccharide biosynthesis and flagellin glycosylation.豚鼠气单胞菌基因组岛对于O抗原脂多糖生物合成和鞭毛蛋白糖基化均是必需的。
J Bacteriol. 2009 Apr;191(8):2851-63. doi: 10.1128/JB.01406-08. Epub 2009 Feb 13.
9
Lateral flagella of Aeromonas species are essential for epithelial cell adherence and biofilm formation.气单胞菌属的侧鞭毛对于上皮细胞黏附和生物膜形成至关重要。
Mol Microbiol. 2002 Jan;43(2):383-97. doi: 10.1046/j.1365-2958.2002.02750.x.
10
Motility and the polar flagellum are required for Aeromonas caviae adherence to HEp-2 cells.豚鼠气单胞菌黏附于HEP - 2细胞需要运动性和极鞭毛。
Infect Immun. 2001 Jul;69(7):4257-67. doi: 10.1128/IAI.69.7.4257-4267.2001.
Zotero 插件