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Embracing the mantra of modellers and synthesizing omics, experiments and models.秉持建模理念并整合组学、实验和模型。
Environ Microbiol Rep. 2017 Feb;9(1):18-20. doi: 10.1111/1758-2229.12491. Epub 2016 Nov 28.
2
Comparative Transcriptomic Analysis Reveals Novel Insights into the Adaptive Response of to Changing Ambient Phosphorus.比较转录组分析揭示了[具体对象]对环境磷变化适应性反应的新见解。 (原文中“of to”之间缺少具体内容,翻译时根据语境补充为“[具体对象]对”)
Front Microbiol. 2016 Sep 20;7:1476. doi: 10.3389/fmicb.2016.01476. eCollection 2016.
3
Patterns of Transcript Abundance of Eukaryotic Biogeochemically-Relevant Genes in the Amazon River Plume.亚马逊河羽流中与生物地球化学相关的真核基因转录本丰度模式
PLoS One. 2016 Sep 6;11(9):e0160929. doi: 10.1371/journal.pone.0160929. eCollection 2016.
4
Phosphorus physiological ecology and molecular mechanisms in marine phytoplankton.海洋浮游植物中磷的生理生态学及分子机制
J Phycol. 2016 Feb;52(1):10-36. doi: 10.1111/jpy.12365. Epub 2016 Jan 11.
5
Noncoding and coding transcriptome responses of a marine diatom to phosphate fluctuations.一种海洋硅藻对磷酸盐波动的非编码和编码转录组反应。
New Phytol. 2016 Apr;210(2):497-510. doi: 10.1111/nph.13787. Epub 2015 Dec 17.
6
Integration of Light and Photoperiodic Signaling in Transcriptional Nuclear Foci.转录核小体中光与光周期信号的整合
Dev Cell. 2015 Nov 9;35(3):311-21. doi: 10.1016/j.devcel.2015.10.008.
7
Changes in gene expression of Prymnesium parvum induced by nitrogen and phosphorus limitation.氮磷限制诱导的微小原甲藻基因表达变化
Front Microbiol. 2015 Jun 24;6:631. doi: 10.3389/fmicb.2015.00631. eCollection 2015.
8
Examination of metabolic responses to phosphorus limitation via proteomic analyses in the marine diatom Phaeodactylum tricornutum.通过蛋白质组学分析研究海洋硅藻三角褐指藻对磷限制的代谢反应。
Sci Rep. 2015 May 28;5:10373. doi: 10.1038/srep10373.
9
Dynamics of nutrient uptake strategies: lessons from the tortoise and the hare.养分吸收策略的动态变化:龟兔赛跑的启示。
Theor Ecol. 2011;4(2):163-177. doi: 10.1007/s12080-010-0110-0. Epub 2011 Jan 11.
10
Impact of ocean phytoplankton diversity on phosphate uptake.海洋浮游植物多样性对磷酸盐吸收的影响。
Proc Natl Acad Sci U S A. 2014 Dec 9;111(49):17540-5. doi: 10.1073/pnas.1420760111. Epub 2014 Nov 24.

时间磷酸盐梯度揭示了浮游植物磷酸盐吸收中的不同适应反应。

Temporal phosphate gradients reveal diverse acclimation responses in phytoplankton phosphate uptake.

机构信息

Department of Mathematics and Statistics, University of Strathclyde, Livingstone Tower, 26 Richmond St., Glasgow, Scotland, G1 1XH, UK.

Schiermeier Olentangy River Wetland Research Park, School of Environment and Natural Resources, The Ohio State University, Columbus, OH, 43202, USA.

出版信息

ISME J. 2019 Nov;13(11):2834-2845. doi: 10.1038/s41396-019-0473-1. Epub 2019 Jul 26.

DOI:10.1038/s41396-019-0473-1
PMID:31350454
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6794288/
Abstract

Phytoplankton face environmental nutrient variations that occur in the dynamic upper layers of the ocean. Phytoplankton cells are able to rapidly acclimate to nutrient fluctuations by adjusting their nutrient-uptake system and metabolism. Disentangling these acclimation responses is a critical step in bridging the gap between phytoplankton cellular physiology and community ecology. Here, we analyzed the dynamics of phosphate (P) uptake acclimation responses along different P temporal gradients by using batch cultures of the diatom Phaeodactylum tricornutum. We employed a multidisciplinary approach that combined nutrient-uptake bioassays, transcriptomic analysis, and mathematical models. Our results indicated that cells increase their maximum nutrient-uptake rate (V) both in response to P pulses and strong phosphorus limitation. The upregulation of three genes coding for different P transporters in cells experiencing low intracellular phosphorus levels supported some of the observed V variations. In addition, our mathematical model reproduced the empirical V patterns by including two types of P transporters upregulated at medium-high environmental and low intracellular phosphorus levels, respectively. Our results highlight the existence of a sequence of acclimation stages along the phosphate continuum that can be understood as a succession of acclimation responses. We provide a novel conceptual framework that can contribute to integrating and understanding the dynamics and wide diversity of acclimation responses developed by phytoplankton.

摘要

浮游植物面临着海洋上层动态环境中发生的营养物质变化。浮游植物细胞能够通过调整其营养吸收系统和新陈代谢,快速适应营养波动。解开这些适应反应是弥合浮游植物细胞生理学和群落生态学之间差距的关键步骤。在这里,我们通过使用菱形藻的分批培养物,分析了在不同磷时间梯度下磷吸收适应反应的动态。我们采用了一种多学科的方法,结合了营养吸收生物测定、转录组分析和数学模型。我们的结果表明,细胞既可以响应磷脉冲又可以响应强烈的磷限制来增加其最大养分吸收速率(V)。在细胞内磷水平较低的情况下,编码三种不同磷转运蛋白的基因上调,这支持了观察到的一些 V 变化。此外,我们的数学模型通过包括在中高环境磷水平和低细胞内磷水平下分别上调的两种类型的磷转运蛋白,再现了经验 V 模式。我们的结果强调了沿着磷酸盐连续体存在一系列适应阶段,可以将其理解为一系列适应反应的连续。我们提供了一个新的概念框架,可以有助于整合和理解浮游植物所开发的适应反应的动态和广泛多样性。