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基于PD630中T7 RNA聚合酶表达系统构建遗传逻辑门。

Construction of Genetic Logic Gates Based on the T7 RNA Polymerase Expression System in PD630.

作者信息

DeLorenzo Drew M, Moon Tae Seok

机构信息

Department of Energy, Environmental and Chemical Engineering , Washington University in St. Louis , St. Louis , Missouri 63130 , United States.

Division of Biology and Biomedical Sciences , Washington University in St. Louis , St. Louis , Missouri 63130 , United States.

出版信息

ACS Synth Biol. 2019 Aug 16;8(8):1921-1930. doi: 10.1021/acssynbio.9b00213. Epub 2019 Aug 7.

Abstract

PD630 () is a nonmodel, Gram-positive bacterium that holds promise as a biological catalyst for the conversion of lignocellulosic biomass to value-added products. In particular, it demonstrates both a high tolerance for and an ability to consume inhibitory lignin-derived aromatics, generates large quantities of lipids, exhibits a relatively rapid growth rate, and has a growing genetic toolbox for engineering. However, the availability of genetic parts for tunable, high-activity gene expression is still limited in . Furthermore, genetic logic circuits for sophisticated gene regulation have never been demonstrated in spp. To address these shortcomings, two inducible T7 RNA polymerase-based expression systems were implemented for the first time in and applied to the construction of AND and NAND genetic logic gates. Additionally, three isopropyl β-d-1-thiogalactopyranoside (IPTG)-inducible promoters were created by inserting LacI binding sites into newly characterized constitutive promoters. Furthermore, four novel aromatic sensors for 4-hydroxybenzoic acid, vanillic acid, sodium benzoate, and guaiacol were developed, expanding the gene expression toolbox. Finally, the T7 RNA polymerase platform was combined with a synthetic IPTG-inducible promoter to create an IMPLY logic gate. Overall, this work represents the first demonstration of a heterologous RNA polymerase system and synthetic genetic logic in , enabling complex and tunable gene regulation in this promising nonmodel host for bioproduction.

摘要

PD630()是一种非模式革兰氏阳性细菌,有望成为将木质纤维素生物质转化为高附加值产品的生物催化剂。具体而言,它对抑制性木质素衍生芳烃具有高耐受性且有能力消耗这些芳烃,能产生大量脂质,生长速度相对较快,并且拥有不断发展的基因工程工具箱。然而,在……中,用于可调谐、高活性基因表达的遗传元件仍然有限。此外,复杂基因调控的遗传逻辑电路从未在……物种中得到证明。为了解决这些缺点,首次在……中实施了两种基于T7 RNA聚合酶的诱导表达系统,并将其应用于构建与门和与非门遗传逻辑门。此外,通过将LacI结合位点插入新鉴定的组成型启动子中,创建了三种异丙基β - d - 1 - 硫代半乳糖苷(IPTG)诱导型启动子。此外,还开发了四种用于4 - 羟基苯甲酸、香草酸、苯甲酸钠和愈创木酚的新型芳香族传感器,扩展了基因表达工具箱。最后,将T7 RNA聚合酶平台与合成的IPTG诱导型启动子相结合,创建了一个蕴含逻辑门。总体而言,这项工作代表了在……中首次证明异源RNA聚合酶系统和合成遗传逻辑,从而能够在这个有前景的非模式生物生产宿主中实现复杂且可调谐的基因调控。

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