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不同辣椒花γ-硫素肽的膜相互作用的体外和计算研究。

In vitro and in silico studies on membrane interactions of diverse Capsicum annuum flower γ-thionin peptides.

机构信息

Bioinformatics Centre, Savitribai Phule Pune University, Pune, Maharashtra, India.

Physical Chemistry Division, National Chemical Laboratory, Pune, Maharashtra, India.

出版信息

Proteins. 2020 Jan;88(1):227-236. doi: 10.1002/prot.25791. Epub 2019 Aug 19.

Abstract

Thionins are small, cysteine-rich peptides that play an important role in plant defense, primarily through their interactions with membranes. Eight novel γ-thionin peptides (CanThio1-8) were isolated from the flower of Capsicum annuum. Sequence analysis revealed that the peptides cluster into three groups. A representative peptide from each group (CanThio1, 2, and 3) was used for experimental characterization. Interestingly, peptides were found to possess some cytotoxic activity against normal human embryonic kidney cell line but higher cytotoxicity against cancer cell line MCF-7. CanThio3 peptide was chosen as a representative peptide to study the molecular mechanism of action on membranes. Microsecond timescale atomistic simulations of CanThio3 were performed in the presence of a POPC (1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine) lipid bilayer. Simulations revealed that CanThio3 interacts with the bilayer and causes lipid thinning in the vicinity. Nonpolar amino acids specific to the α-core region of CanThio3 along with nonpolar residues in the γ-core region are seen to interact with the lipid tails. The differences in the amino acid sequence of CanThio peptides in these regions explain the variability in cytotoxic activities. In summary, our results demonstrate the membrane-mediated activity of a novel series of γ-thionin peptides from C. annuum.

摘要

植物硫素是富含半胱氨酸的小肽,在植物防御中起着重要作用,主要通过与膜的相互作用实现。从辣椒花中分离到了 8 种新型γ-硫素肽(CanThio1-8)。序列分析表明,这些肽分为 3 组。每组选择一个代表性肽(CanThio1、2 和 3)进行实验表征。有趣的是,发现这些肽对正常人类胚胎肾细胞系具有一定的细胞毒性,但对 MCF-7 癌细胞系的细胞毒性更高。选择 CanThio3 肽作为代表性肽研究其在膜上的作用机制。在 POPC(1-棕榈酰-2-油酰-sn-甘油-3-磷酸胆碱)脂质双层存在的情况下,对 CanThio3 进行了微秒时间尺度的原子模拟。模拟结果表明,CanThio3 与双层相互作用并导致附近的脂质变薄。CanThio3 的α-核心区域特有的非极性氨基酸以及γ-核心区域的非极性残基与脂质尾部相互作用。这些区域中 CanThio 肽的氨基酸序列差异解释了细胞毒性活性的可变性。总之,我们的结果表明,来自 C. annuum 的一系列新型γ-硫素肽具有通过膜介导的活性。

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