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来自柔嫩真杆菌的一种依赖 NADH 的还原酶催化黄酮和黄烷醇的立体特异性杂环裂解。

An NADH-Dependent Reductase from Eubacterium ramulus Catalyzes the Stereospecific Heteroring Cleavage of Flavanones and Flavanonols.

机构信息

Department of Gastrointestinal Microbiology, German Institute of Human Nutrition Potsdam-Rehbruecke, Nuthetal, Germany

Pharmaceutical Institute, Pharmaceutical Chemistry I, University of Bonn, Bonn, Germany.

出版信息

Appl Environ Microbiol. 2019 Sep 17;85(19). doi: 10.1128/AEM.01233-19. Print 2019 Oct 1.

Abstract

The human intestinal anaerobe is known for its ability to degrade various dietary flavonoids. In the present study, we demonstrate the cleavage of the heterocyclic C-ring of flavanones and flavanonols by an oxygen-sensitive NADH-dependent reductase, previously described as enoate reductase, from This flavanone- and flavanonol-cleaving reductase (Fcr) was purified following its heterologous expression in and further characterized. Fcr cleaved the flavanones naringenin, eriodictyol, liquiritigenin, and homoeriodictyol. Moreover, the flavanonols taxifolin and dihydrokaempferol served as substrates. The catalyzed reactions were stereospecific for the (2)-enantiomers of the flavanone substrates and for the (2,3)-configured flavanonols. The enantioenrichment of the nonconverted stereoisomers allowed for the determination of hitherto unknown flavanone racemization rates. Fcr formed the corresponding dihydrochalcones and hydroxydihydrochalcones in the course of an unusual reductive cleavage of cyclic ether bonds. Fcr did not convert members of other flavonoid subclasses, including flavones, flavonols, and chalcones, the latter indicating that the reaction does not involve a chalcone intermediate. This view is strongly supported by the observed enantiospecificity of Fcr. Cinnamic acids, which are typical substrates of bacterial enoate reductases, were also not reduced by Fcr. Based on the presence of binding motifs for dinucleotide cofactors and a 4Fe-4S cluster in the amino acid sequence of Fcr, a cofactor-mediated hydride transfer from NADH onto C-2 of the respective substrate is proposed. Gut bacteria play a crucial role in the metabolism of dietary flavonoids, thereby contributing to their activation or inactivation after ingestion by the human host. Thus, bacterial activities in the intestine may influence the beneficial health effects of these polyphenolic plant compounds. While an increasing number of flavonoid-converting gut bacterial species have been identified, knowledge of the responsible enzymes is still limited. Here, we characterized Fcr as a key enzyme involved in the conversion of flavonoids of several subclasses by , a prevalent human gut bacterium. Sequence similarity of this enzyme to hypothetical proteins from other flavonoid-degrading intestinal bacteria in databases suggests a more widespread occurrence of this enzyme. Functional characterization of gene products of human intestinal microbiota enables the assignment of metagenomic sequences to specific bacteria and, more importantly, to certain activities, which is a prerequisite for targeted modulation of gut microbial functionality.

摘要

人体肠道厌氧菌以能够降解各种饮食类黄酮而闻名。在本研究中,我们展示了先前被描述为烯酸还原酶的氧敏感 NADH 依赖性还原酶对黄烷酮和黄烷醇的杂环 C 环的切割,这种黄烷酮和黄烷醇裂解还原酶(Fcr)在 中异源表达后进行了纯化,并进一步进行了表征。Fcr 切割了黄烷酮柚皮素、圣草酚、甘草素和高圣草酚。此外,黄烷醇紫杉和二氢山柰酚可作为底物。催化反应对黄烷酮底物的(2)-对映异构体和(2,3)-构型的黄烷醇具有立体特异性。非转化立体异构体的对映体富集允许确定迄今为止未知的黄烷酮外消旋化速率。Fcr 在环状醚键的异常还原裂解过程中形成相应的二氢查耳酮和羟二氢查耳酮。Fcr 不会转化其他类黄酮亚类的成员,包括黄酮、黄酮醇和查耳酮,后者表明该反应不涉及查耳酮中间体。这一观点得到了 Fcr 观察到的对映体特异性的强烈支持。肉桂酸是细菌烯酸还原酶的典型底物,也不能被 Fcr 还原。基于 Fcr 氨基酸序列中存在二核苷酸辅因子结合基序和 4Fe-4S 簇,提出了辅因子介导的从 NADH 到各自底物 C-2 的氢转移。肠道细菌在饮食类黄酮的代谢中起着至关重要的作用,从而在人类宿主摄入后促进其激活或失活。因此,肠道中的细菌活性可能会影响这些多酚植物化合物的有益健康作用。虽然越来越多的参与转化类黄酮的肠道细菌种类已经被鉴定出来,但对相关酶的了解仍然有限。在这里,我们将 Fcr 鉴定为一种关键酶,它通过 ,一种普遍存在的人类肠道细菌,参与了几种类黄酮的转化。该酶与数据库中其他肠道降解类黄酮的假设蛋白的序列相似性表明,这种酶的广泛存在。对人类肠道微生物群基因产物的功能表征使我们能够将宏基因组序列分配给特定的细菌,更重要的是,分配给特定的活性,这是靶向调节肠道微生物功能的前提。

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