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色氨酸侧链与水合水分子之间的偶极-偶极相互作用主导了溶菌酶观察到的动态斯托克斯位移。

Dipole-dipole interactions between tryptophan side chains and hydration water molecules dominate the observed dynamic stokes shift of lysozyme.

机构信息

Department of Physics, Faculty of Science and Technology, Keio University, 3-14-1 Hiyoshi, Kohoku-ku, Yokihama 223-8522, Japan.

Department of Physics, Faculty of Science and Technology, Keio University, 3-14-1 Hiyoshi, Kohoku-ku, Yokihama 223-8522, Japan.

出版信息

Biochim Biophys Acta Gen Subj. 2020 Feb;1864(2):129406. doi: 10.1016/j.bbagen.2019.07.015. Epub 2019 Aug 1.

DOI:10.1016/j.bbagen.2019.07.015
PMID:31377191
Abstract

The fluorescence intensity of tryptophan residues in hen egg-white lysozyme was measured up to 500 ps after the excitation by irradiation pulses at 290 nm. From the time-dependent variation of fluorescence intensity in a wavelength range of 320-370 nm, the energy relaxation in the dynamic Stokes shift was reconstructed as the temporal variation in wavenumber of the estimated fluorescence maximum. The relaxation was approximated by two exponential curves with decay constants of 1.2 and 26.7 ps. To interpret the relaxation, a molecular dynamics simulation of 75 ns was conducted for lysozyme immersed in a water box. From the simulation, the energy relaxation in the electrostatic interactions of each tryptophan residue was evaluated by using a scheme derived from the linear response theory. Dipole-dipole interactions between each of the Trp62 and Trp123 residues and hydration water molecules displayed an energy relaxation similar to that experimentally observed regarding time constants and magnitudes. The side chains of these residues were partly or fully exposed to the solvent. In addition, by inspecting the variation in dipole moments of the hydration water molecules around lysozyme, it was suggested that the observed relaxation could be attributed to the orientational relaxation of hydration water molecules participating in the hydrogen-bond network formed around each of the two tryptophan residues.

摘要

测定了在 290nm 光激发下,鸡卵清白蛋白溶菌酶中色氨酸残基的荧光强度,在激发后 500ps 内达到最大值。通过测量 320-370nm 波长范围内的荧光强度随时间的变化,重建了动态斯托克斯位移中的能量弛豫,其特征是估计的荧光最大波长的波数随时间的变化。弛豫过程用两个指数曲线来近似,其衰减常数分别为 1.2 和 26.7ps。为了解释这种弛豫现象,对溶菌酶在水盒中的分子动力学模拟进行了 75ns 的模拟。通过模拟,利用线性响应理论推导的方案评估了每个色氨酸残基的静电相互作用中的能量弛豫。Trp62 和 Trp123 残基与水合水分子之间的偶极-偶极相互作用的能量弛豫,在时间常数和幅度方面与实验观察到的结果相似。这些残基的侧链部分或完全暴露于溶剂中。此外,通过检查溶菌酶周围水合水分子偶极矩的变化,可以认为观察到的弛豫可能归因于参与两个色氨酸残基周围氢键网络形成的水合水分子的取向弛豫。

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