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5'-对氟磺酰苯甲酰腺苷对荧光假单胞菌对羟基苯甲酸羟化酶中酪氨酸-38的化学修饰:用于阐明NADPH结合位点的探针?参与催化、序列中的定位以及与三级结构的拟合

Chemical modification of tyrosine-38 in p-hydroxybenzoate hydroxylase from Pseudomonas fluorescens by 5'-p-fluorosulfonylbenzoyladenosine: a probe for the elucidation of the NADPH binding site? Involvement in catalysis, assignment in sequence and fitting to the tertiary structure.

作者信息

van Berkel W J, Müller F, Jekel P A, Weijer W J, Schreuder H A, Wierenga R K

机构信息

Department of Biochemistry, Agricultural University, Wageningen, The Netherlands.

出版信息

Eur J Biochem. 1988 Sep 15;176(2):449-59. doi: 10.1111/j.1432-1033.1988.tb14302.x.

DOI:10.1111/j.1432-1033.1988.tb14302.x
PMID:3138119
Abstract

p-Hydroxybenzoate hydroxylase from Pseudomonas fluorescens was covalently modified by the nucleotide analog 5'-(p-fluorosulfonylbenzoyl)-adenosine in the presence of 20% dimethylsulfoxide. The inactivation reaction is pH-dependent and does not obey pseudo-first-order kinetics, due to spontaneous hydrolysis of the reagent. The kinetic data further indicate that a weak, reversible enzyme-inhibitor complex is an intermediate in the inactivation reaction and that only one amino acid residue is responsible for the loss of activity. The inactivation is strongly inhibited by NADPH and 2',5'ADP. Steady-state kinetics and 2',5'ADP bioaffinity chromatography of the modified enzyme suggest that the essential residue is not directly involved in NADPH binding. Sequence studies show that Tyr-38 is the main residue protected from modification in the presence of NADPH. From crystallographic studies it is known that the hydroxyl group of Tyr-38 is 1.84 nm away from the active site. Model-building studies using computer graphics show that this distance can be accommodated when FSO2BzAdo binds in an extended conformation with the sulfonylbenzoyl portion in an orientation different from the nicotin-amide ring of NADPH.

摘要

在20%二甲基亚砜存在的情况下,来自荧光假单胞菌的对羟基苯甲酸羟化酶被核苷酸类似物5'-(对氟磺酰苯甲酰)-腺苷共价修饰。由于试剂的自发水解,失活反应依赖于pH值,且不遵循准一级动力学。动力学数据进一步表明,一种弱的、可逆的酶-抑制剂复合物是失活反应的中间体,并且只有一个氨基酸残基导致活性丧失。NADPH和2',5'-ADP强烈抑制失活。修饰酶的稳态动力学和2',5'-ADP生物亲和色谱表明,必需残基不直接参与NADPH结合。序列研究表明,Tyr-38是在NADPH存在下受修饰保护的主要残基。从晶体学研究可知,Tyr-38的羟基距离活性位点1.84 nm。使用计算机图形学的模型构建研究表明,当FSO2BzAdo以扩展构象结合且磺酰苯甲酰部分的取向不同于NADPH的烟酰胺环时,这个距离是可以接受的。

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