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天冬氨酸中的气相立体反转:反应途径、计算光谱分析及其天体物理学意义。

Gas-Phase Stereoinversion in Aspartic Acid: Reaction Pathways, Computational Spectroscopic Analysis, and Its Astrophysical Relevance.

作者信息

Kaur Ramanpreet, Rani Namrata

机构信息

Quantum Chemistry Group, Department of Chemistry & Centre of Advanced Studies in Chemistry, Panjab University, Chandigarh 160014, India.

出版信息

ACS Omega. 2018 Oct 31;3(10):14431-14447. doi: 10.1021/acsomega.8b01721.

DOI:10.1021/acsomega.8b01721
PMID:31458129
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6645146/
Abstract

Noncatalytic reaction pathways for the gas-phase stereoinversion in aspartic acid are mapped employing a global reaction route mapping strategy using quantum mechanical computations. The species including the transition states (TSs) traced along the stereoinversion pathways are characterized using rotational and vibrational computational spectroscopic analysis while accounting for the vibrational corrections to rotational constants and anharmonic effects. Notably, the TS structures traced along the stereochemical pathways resemble the achiral ammonium ylide and imine intermediates as observed in the Strecker synthesis of chiral amino acids. A few of the probable stereoinversion pathways proposed proceed through the proton or hydrogen atom transfer. The feasibility of the pathways under conditions akin to interstellar medium (ISM) is further discussed in terms of natural bond orbital analysis. The stereoinversion pathways proposed in this work may proceed via photoirradiation in the ISM, which though can be revealed by exploring the excited-state potential energy surface. In this context, the spectroscopic data generated in this work can provide valuable assistance toward the astrophysical detection of chiral molecules in outer space.

摘要

采用量子力学计算的全局反应路径映射策略,绘制了天冬氨酸气相立体反转的非催化反应路径。沿着立体反转路径追踪的包括过渡态(TSs)在内的物种,通过旋转和振动计算光谱分析进行表征,同时考虑了对旋转常数的振动校正和非谐效应。值得注意的是,沿着立体化学路径追踪的TS结构类似于在手性氨基酸的斯特雷克合成中观察到的非手性铵叶立德和亚胺中间体。提出的一些可能的立体反转路径是通过质子或氢原子转移进行的。根据自然键轨道分析,进一步讨论了在类似于星际介质(ISM)的条件下这些路径的可行性。这项工作中提出的立体反转路径可能通过ISM中的光照射进行,这虽然可以通过探索激发态势能面来揭示。在此背景下,这项工作中生成的光谱数据可为外层空间手性分子的天体物理探测提供有价值的帮助。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5df/6645146/9103434eb06a/ao-2018-01721v_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5df/6645146/0848d2444275/ao-2018-01721v_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5df/6645146/8699c734b8c1/ao-2018-01721v_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5df/6645146/68e4113d4697/ao-2018-01721v_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5df/6645146/3e3a9122aa18/ao-2018-01721v_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5df/6645146/1d8a347accf2/ao-2018-01721v_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5df/6645146/163d236d33dc/ao-2018-01721v_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5df/6645146/9103434eb06a/ao-2018-01721v_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5df/6645146/0848d2444275/ao-2018-01721v_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5df/6645146/8699c734b8c1/ao-2018-01721v_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5df/6645146/68e4113d4697/ao-2018-01721v_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5df/6645146/3e3a9122aa18/ao-2018-01721v_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5df/6645146/1d8a347accf2/ao-2018-01721v_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5df/6645146/163d236d33dc/ao-2018-01721v_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5df/6645146/9103434eb06a/ao-2018-01721v_0007.jpg

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本文引用的文献

1
Mechanism and Kinetics of the Gas-Phase Stereoinversion in Proteinogenic l-Threonine and Its Astrophysical Relevance.蛋白质原性L-苏氨酸气相立体反转的机制与动力学及其天体物理学意义
J Phys Chem A. 2018 Sep 27;122(38):7572-7586. doi: 10.1021/acs.jpca.8b06659. Epub 2018 Sep 18.
2
Implementation and performance of the artificial force induced reaction method in the GRRM17 program.人工力诱发反应方法在 GRRM17 程序中的实现和性能。
J Comput Chem. 2018 Feb 5;39(4):233-251. doi: 10.1002/jcc.25106. Epub 2017 Nov 14.
3
Discovery of the interstellar chiral molecule propylene oxide (CH₃CHCH₂O).
发现星际手性分子环氧丙烷(CH₃CHCH₂O)。
Science. 2016 Jun 17;352(6292):1449-52. doi: 10.1126/science.aae0328. Epub 2016 Jun 14.
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Accuracy and Efficiency of Coupled-Cluster Theory Using Density Fitting/Cholesky Decomposition, Frozen Natural Orbitals, and a t1-Transformed Hamiltonian.使用密度拟合/Cholesky分解、冻结自然轨道和t1变换哈密顿量的耦合簇理论的准确性和效率
J Chem Theory Comput. 2013 Jun 11;9(6):2687-96. doi: 10.1021/ct400250u. Epub 2013 May 10.
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From roaming atoms to hopping surfaces: mapping out global reaction routes in photochemistry.从漫游原子到跳跃表面:描绘光化学中的全局反应途径。
J Am Chem Soc. 2015 Mar 18;137(10):3433-45. doi: 10.1021/ja512394y. Epub 2015 Mar 2.
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Mechanisms for the inversion of chirality: global reaction route mapping of stereochemical pathways in a probable chiral extraterrestrial molecule, 2-aminopropionitrile.手性反转的机制:一种可能的手性外星分子2-氨基丙腈中立体化学途径的全局反应路线图
J Chem Phys. 2015 Feb 21;142(7):074307. doi: 10.1063/1.4907593.
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Astrochemistry of dust, ice and gas: introduction and overview.尘埃、冰和气体的天体化学:引言与概述。
Faraday Discuss. 2014;168:9-47. doi: 10.1039/c4fd00140k.
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