Kaur Sarabjeet, Ohri Ashita, Sharma Purshotam
Computational Biochemistry Laboratory, Department of Chemistry and Centre for Advanced Studies in Chemistry, Panjab University, Chandigarh 160014, India.
ACS Omega. 2019 Jul 26;4(7):12771-12781. doi: 10.1021/acsomega.9b01169. eCollection 2019 Jul 31.
Knowledge of prebiotic nucleobase formation is important for understanding the origin of contemporary genetics. Observation of nucleobase precursor radicals in previous impact laser plasma simulations of the late heavy bombardment period (FerusProc. Natl. Acad. Sci. U.S.A.2015, 112, 657) points toward possible nucleobase formation through free-radical pathways. However, previously explored radical routes to nucleobase formation involve a large number of reaction steps, repetitive addition of precursors, and a number of chemical transformations. The possibility of competing side reactions under such conditions questions the feasibility of such pathways. In view of these shortcomings, the present work employs density functional theory to explore purine formation pathways through reaction of cyanamide and cyanoacetylene with radicals via a five-membered intermediate, 4-cyanoimidazole in the presence of ammonia. Our analysis reveals that the skeletal components of 4-cyanoimidazole can be solely obtained from cyanamide and cyanoacetylene via barrierless cyclization and a small number of reaction steps. In addition, the proposed mechanisms are characterized by a small number of precursors and low energy barriers and are thus likely feasible under extreme conditions on the prebiotic earth such as meteoritic impact during late heavy bombardment period. Overall, the present study underscores the importance of cyanamide and cyanoacetylene precursors in kinetically accessible routes to purine formation.
了解益生元核碱基的形成对于理解当代遗传学的起源至关重要。在先前对晚期重轰炸期的冲击激光等离子体模拟中观察到核碱基前体自由基(FerusProc。美国国家科学院学报。2015, 112, 657)表明可能通过自由基途径形成核碱基。然而,先前探索的核碱基形成的自由基途径涉及大量反应步骤、前体的重复添加以及许多化学转化。在这种条件下竞争副反应的可能性质疑了这些途径的可行性。鉴于这些缺点,本工作采用密度泛函理论来探索在氨存在下氰胺和氰基乙炔与自由基通过五元中间体4-氰基咪唑反应形成嘌呤的途径。我们的分析表明,4-氰基咪唑的骨架成分可以仅通过无障碍环化和少量反应步骤从氰胺和氰基乙炔获得。此外,所提出的机制的特点是前体数量少且能垒低,因此在早期地球的极端条件下,如晚期重轰炸期的陨石撞击,可能是可行的。总体而言,本研究强调了氰胺和氰基乙炔前体在动力学上可及的嘌呤形成途径中的重要性。