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来自龟裂链霉菌的TchmY的晶体结构。

Crystal structure of TchmY from Actinoplanes teichomyceticus.

作者信息

Yang Zhenzhen, Zhang Lilan, Yu Xuejing, Wu Shan, Yang Yong, Hu Yumei, Li Qian, Shang Na, Guo Rey Ting, Chen Chun Chi, Dai Longhai, Liu Weidong

机构信息

College of Biotechnology, Tianjin University of Science and Technology, Tianjin 300457, People's Republic of China.

State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei Collaborative Innovation Center for Green Transformation of Bio-Resources, Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, Wuhan 430062, People's Republic of China.

出版信息

Acta Crystallogr F Struct Biol Commun. 2019 Sep 1;75(Pt 9):570-575. doi: 10.1107/S2053230X19010914. Epub 2019 Aug 28.

Abstract

Moenomycin-type antibiotics are phosphoglycolipids that are notable for their unique modes of action and have proven to be useful in animal nutrition. The gene clusters tchm from Actinoplanes teichomyceticus and moe from Streptomyces are among a limited number of known moenomycin-biosynthetic pathways. Most genes in tchm have counterparts in the moe cluster, except for tchmy and tchmz, the functions of which remain unknown. Sequence analysis indicates that TchmY belongs to the isoprenoid enzyme C2-like superfamily and may serve as a prenylcyclase. The enzyme was proposed to be involved in terminal cyclization of the moenocinyl chain in teichomycin, leading to the diumycinol chain of moenomycin isomers. Here, recombinant TchmY protein was expressed in Escherichia coli and its crystal structure was solved by SIRAS. Structural analysis and comparison with other prenylcyclases were performed. The overall fold of TchmY consists of an (α/α)-barrel, and a potential substrate-binding pocket is found in the central chamber. These results should provide important information regarding the biosynthetic basis of moenomycin antibiotics.

摘要

莫能菌素类抗生素是磷酸糖脂,以其独特的作用方式而闻名,并且已被证明在动物营养中有用。来自游动放线菌的tchm基因簇和来自链霉菌的moe基因簇是已知的有限数量的莫能菌素生物合成途径之一。tchm中的大多数基因在moe簇中有对应物,但tchmy和tchmz除外,其功能仍然未知。序列分析表明,TchmY属于类异戊二烯酶C2样超家族,可能作为异戊烯环化酶。有人提出该酶参与磷霉素中莫能菌素链的末端环化,从而产生莫能菌素异构体的双霉素醇链。在这里,重组TchmY蛋白在大肠杆菌中表达,并通过SIRAS解析了其晶体结构。进行了结构分析并与其他异戊烯环化酶进行了比较。TchmY的整体折叠由一个(α/α)桶组成,并且在中央腔中发现了一个潜在的底物结合口袋。这些结果应该为莫能菌素类抗生素的生物合成基础提供重要信息。

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本文引用的文献

1
Complex structures of MoeN5 with substrate analogues suggest sequential catalytic mechanism.
Biochem Biophys Res Commun. 2019 Apr 16;511(4):800-805. doi: 10.1016/j.bbrc.2019.02.131. Epub 2019 Mar 2.
2
Processing of X-ray diffraction data collected in oscillation mode.
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
3
Structure of the ent-Copalyl Diphosphate Synthase PtmT2 from Streptomyces platensis CB00739, a Bacterial Type II Diterpene Synthase.
J Am Chem Soc. 2016 Aug 31;138(34):10905-15. doi: 10.1021/jacs.6b04317. Epub 2016 Aug 18.
4
A gene cluster for the biosynthesis of moenomycin family antibiotics in the genome of teicoplanin producer Actinoplanes teichomyceticus.
Appl Microbiol Biotechnol. 2016 Sep;100(17):7629-38. doi: 10.1007/s00253-016-7685-3. Epub 2016 Jun 25.
5
Dali server update.
Nucleic Acids Res. 2016 Jul 8;44(W1):W351-5. doi: 10.1093/nar/gkw357. Epub 2016 Apr 29.
6
Moenomycin Biosynthesis: Structure and Mechanism of Action of the Prenyltransferase MoeN5.
Angew Chem Int Ed Engl. 2016 Apr 4;55(15):4716-20. doi: 10.1002/anie.201511388. Epub 2016 Mar 8.
7
Development of bacterial transglycosylase inhibitors as new antibiotics: moenomycin A treatment for drug-resistant Helicobacter pylori.
Bioorg Med Chem Lett. 2014 Jun 1;24(11):2412-4. doi: 10.1016/j.bmcl.2014.04.041. Epub 2014 Apr 18.
9
Linking crystallographic model and data quality.
Science. 2012 May 25;336(6084):1030-3. doi: 10.1126/science.1218231.
10
Insights into the mechanism of the antibiotic-synthesizing enzyme MoeO5 from crystal structures of different complexes.
Angew Chem Int Ed Engl. 2012 Apr 23;51(17):4157-60. doi: 10.1002/anie.201108002. Epub 2012 Mar 16.

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