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A chemical-genetic screen identifies ABHD12 as an oxidized-phosphatidylserine lipase.一项化学生物学筛选发现 ABHD12 是一种氧化型磷脂酰丝氨酸脂肪酶。
Nat Chem Biol. 2019 Feb;15(2):169-178. doi: 10.1038/s41589-018-0195-0. Epub 2019 Jan 14.
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Biochemical characterization of the PHARC-associated serine hydrolase ABHD12 reveals its preference for very-long-chain lipids.PHARC 相关丝氨酸水解酶 ABHD12 的生化特性分析揭示了其对超长链脂质的偏好。
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MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update).MOLEonline:一个用于分析通道、隧道和孔隙的网络工具(2018 更新)。
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ABHD14B,一种孤儿丝氨酸水解酶的功能注释。

Functional Annotation of ABHD14B, an Orphan Serine Hydrolase Enzyme.

机构信息

Department of Biology , Indian Institute of Science Education and Research (IISER) Pune , Dr. Homi Bhabha Road Pashan , Pune 411008 , Maharashtra , India.

Department of Chemistry, College of Literature, Science and the Arts , University of Michigan , Ann Arbor , Michigan 48109 , United States.

出版信息

Biochemistry. 2020 Jan 21;59(2):183-196. doi: 10.1021/acs.biochem.9b00703. Epub 2019 Sep 13.

DOI:10.1021/acs.biochem.9b00703
PMID:31478652
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6976303/
Abstract

The metabolic serine hydrolase family is, arguably, one of the largest functional enzyme classes in mammals, including humans, comprising 1-2% of the total proteome. This enzyme family uses a conserved nucleophilic serine residue in the active site to perform diverse hydrolytic reactions and consists of proteases, lipases, esterases, amidases, and transacylases, which are prototypical members of this family. In humans, this enzyme family consists of >250, of which approximately 40% members remain unannotated, in terms of both their endogenous substrates and the biological pathways that they regulate. The enzyme ABHD14B, an outlying member of this family, is also known as CCG1/TAF250-interacting factor B, as it was found to be associated with transcription initiation factor TFIID. The crystal structure of human ABHD14B was determined more than a decade ago; however, its endogenous substrates remain elusive. In this paper, we annotate ABHD14B as a lysine deacetylase (KDAC), showing this enzyme's ability to transfer an acetyl group from a post-translationally acetylated lysine to coenzyme A (CoA), to yield acetyl-CoA, while regenerating the free amine of protein lysine residues. We validate these findings by biochemical assays using recombinantly purified human ABHD14B in conjunction with cellular studies in a mammalian cell line by knocking down ABHD14B and by identification of a putative substrate binding site. Finally, we report the development and characterization of a much-needed, exquisitely selective ABHD14B antibody, and using it, we map the cellular and tissue distribution of ABHD14B and prospective metabolic pathways that this enzyme might biologically regulate.

摘要

代谢丝氨酸水解酶家族可以说是哺乳动物中最大的功能酶类家族之一,包括人类,占总蛋白质组的 1-2%。这个酶家族在活性位点使用保守的亲核丝氨酸残基来执行各种水解反应,包括蛋白酶、脂肪酶、酯酶、酰胺酶和转酰基酶,它们是这个家族的典型成员。在人类中,这个酶家族由>250 个成员组成,其中大约 40%的成员在其内源性底物和它们调节的生物学途径方面仍然没有注释。酶 ABHD14B 是这个家族的一个外围成员,也被称为 CCG1/TAF250 相互作用因子 B,因为它被发现与转录起始因子 TFIID 相关。人类 ABHD14B 的晶体结构在十多年前就已经确定;然而,其内源性底物仍然难以捉摸。在本文中,我们将 ABHD14B 注释为赖氨酸去乙酰化酶(KDAC),表明该酶能够将乙酰基从翻译后乙酰化的赖氨酸转移到辅酶 A(CoA)上,生成乙酰-CoA,同时使蛋白质赖氨酸残基的游离胺再生。我们通过生化测定、使用重组纯化的人类 ABHD14B 结合哺乳动物细胞系中的细胞研究、敲低 ABHD14B 以及鉴定一个假定的底物结合位点来验证这些发现。最后,我们报告了一种急需的、高度选择性的 ABHD14B 抗体的开发和特性,并使用它来描绘 ABHD14B 的细胞和组织分布以及该酶可能在生物学上调节的潜在代谢途径。