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pH 值对耗散粒子动力学模拟中聚电解质复合物形成的影响:从扩展形状到紧凑形状。

Influence of pH on the formation of a polyelectrolyte complex by dissipative particle dynamics simulation: From an extended to a compact shape.

机构信息

Instituto de Física "Luis Rivera Terrazas," Benemérita Universidad Autónoma de Puebla, Apartado Postal J-48, Puebla 72570, Mexico.

Facultad de Ciencias Básicas, Ingeniería y Tecnología, Universidad Autónoma de Tlaxcala, Calzada Apizaquito S/N, Apizaco, Tlaxcala 90300, Mexico.

出版信息

Phys Rev E. 2019 Jul;100(1-1):012505. doi: 10.1103/PhysRevE.100.012505.

Abstract

This work aims to investigate the influence of pH on the mechanism of assembly of macromolecules. We studied the effect of the pH on the interaction of two polyelectrolytes of opposed charge, having the same size, by means of dissipative particle dynamics method. The system consisted of a strong cationic and a weak anionic polyelectrolyte in an aqueous solution containing monovalent counterions. The analysis was made by varying the pH of the solution, which modifies the charge fraction of the weak anionic polyelectrolyte with a dissociation acid constant pKa of 5.5, while the polycation is fully charged in all the pH range used, characteristic of a strong polyelectrolyte. In order to describe the influence of pH on the complexation process, we have analyzed the pair radial distribution functions polyanion-counterion, polycation-counterion, and polyanion-polycation. The complex conformation was studied by means of the radius of gyration and the end-to-end distance of both chains as the pH varied from 1 to 14. A relevant finding obtained here was the relationship between the radial distribution functions and the counterion release from the polyelectrolytes, which leads to a reduction in the size of the complex when pH increased. Surprisingly, a transition from an extended to a compact polyelectrolyte complex was obtained when the pH reached the dissociation acid constant pKa of the weak polyelectrolyte. This systematic study can help to understand a large number of more realistic problems in biological systems such as protein complex, chromatin phase transition, or in complex systems applied in biomedical science.

摘要

这项工作旨在研究 pH 值对大分子组装机制的影响。我们通过耗散粒子动力学方法研究了在相同大小的带相反电荷的两种聚电解质之间相互作用受 pH 值的影响。该体系由带强正电荷的聚电解质和带弱负电荷的聚电解质组成,在含有单价抗衡离子的水溶液中。通过改变溶液的 pH 值来进行分析,这会改变具有离解常数 pKa 为 5.5 的弱阴离子聚电解质的电荷分数,而在使用的所有 pH 值范围内,聚阳离子都是完全带电的,这是强聚电解质的特征。为了描述 pH 值对络合过程的影响,我们分析了聚阴离子-抗衡离子、聚阳离子-抗衡离子和聚阴离子-聚阳离子的对分布函数。通过改变 pH 值,从 1 到 14,研究了均方回转半径和两条链的末端到末端距离的复杂构象。这里得到的一个相关发现是,径向分布函数与聚电解质中抗衡离子的释放之间的关系,这导致当 pH 值增加时,复合物的尺寸减小。令人惊讶的是,当 pH 值达到弱聚电解质的离解常数 pKa 时,复合物从伸展状态转变为紧凑状态。这项系统的研究可以帮助理解生物系统中大量更现实的问题,如蛋白质复合物、染色质相变,或在生物医学科学中应用的复杂系统。

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