Department of Genetics and Human Genetics Institute, Rutgers, The State University of New Jersey, 145 Bevier Road, Piscataway, NJ, 08854-8082, USA.
Department of Genetics and Rutgers Cancer Institute of New Jersey, Rutgers, The State University of New Jersey, 604 Allison Road, Piscataway, NJ, 08854-8082, USA.
Cancer Chemother Pharmacol. 2019 Dec;84(6):1167-1178. doi: 10.1007/s00280-019-03942-y. Epub 2019 Sep 12.
We report on a statistical method for grouping anti-cancer drugs (GRAD) in single mouse trials (SMT). The method assigns candidate drugs into groups that inhibit or do not inhibit tumor growth in patient-derived xenografts (PDX). It determines the statistical significance of the group assignments without replicate trials of each drug.
The GRAD method applies a longitudinal finite mixture model, implemented in the statistical package PROC TRAJ, to analyze a mixture of tumor growth curves for portions of the same tumor in different mice, each single mouse exposed to a different drug. Each drug is classified into an inhibitory or non-inhibitory group. There are several advantages to the GRAD method for SMT. It determines that probability that the grouping is correct, uses the entire longitudinal tumor growth curve data for each drug treatment, can fit different shape growth curves, accounts for missing growth curve data, and accommodates growth curves of different time periods.
We analyzed data for 22 drugs for 18 human colorectal tumors provided by researchers in a previous publication. The GRAD method identified 18 drugs that were inhibitory against at least one tumor, and 10 tumors for which there was at least one inhibitory drug. Analysis of simulated data indicated that the GRAD method has a sensitivity of 84% and a specificity of 98%.
A statistical method, GRAD, can group anti-cancer drugs into those that are inhibitory and those that are non-inhibitory in single mouse trials and provide probabilities that the grouping is correct.
我们报告了一种用于在单只小鼠试验(SMT)中对抗癌药物进行分组(GRAD)的统计方法。该方法将候选药物分配到抑制或不抑制患者来源异种移植瘤(PDX)中肿瘤生长的组中。它确定了分组的统计显著性,而无需对每种药物进行重复试验。
GRAD 方法应用纵向有限混合模型,该模型在统计软件包 PROC TRAJ 中实现,以分析同一肿瘤不同小鼠的肿瘤生长曲线部分的混合物,每个单只小鼠暴露于不同的药物。每种药物被分为抑制或非抑制组。GRAD 方法用于 SMT 有几个优点。它确定了分组正确的概率,使用了每种药物治疗的整个纵向肿瘤生长曲线数据,可以拟合不同形状的生长曲线,考虑了缺失的生长曲线数据,并适应了不同时间段的生长曲线。
我们分析了先前发表的研究人员提供的 22 种药物对 18 个人结直肠肿瘤的数据。GRAD 方法确定了 18 种抑制至少一种肿瘤的药物,以及至少有一种抑制药物的 10 种肿瘤。对模拟数据的分析表明,GRAD 方法的敏感性为 84%,特异性为 98%。
一种统计方法,GRAD,可以将抗癌药物分为在单只小鼠试验中抑制和非抑制的药物,并提供分组正确的概率。