Safika Safika, Wardinal Wardinal, Ismail Yulia Sari, Nisa Khairun, Sari Wenny Novita
Department of Veterinary Infection Diseases and Veterinary Public Health, Faculty of Veterinary Medicine, IPB University, Jalan Agatis, IPB Dermaga, Bogor 16680, Indonesia.
Department of Biology, Education and Teaching Faculty, Ar-Raniry State Islamic University Banda Aceh 23111, Indonesia.
Vet World. 2019 Jul;12(7):1060-1065. doi: 10.14202/vetworld.2019.1060-1065. Epub 2019 Jul 18.
This study aimed to isolate and identify lactic acid bacteria (LAB) in wild Sumatran orangutans to provide more information about LAB diversity derived from Sumatran orangutan feces.
Fecal sampling from three female orangutans, around 35 years old, was carried out in the wild forest areas at the research station of Suaq Belimbing Gunung Leuser National Park located in the South Aceh district. Orangutan fecal samples were taken in the morning when the orangutans first defecated. The orangutans were above the tree, which is approximately 12-15 m from the ground where feces were found.
Fermentation testing using the API 50 CHL Kit showed that OUL4 isolates were identified as ssp. with an identity value of 73.5%. Homology analysis demonstrated that the OUL4 isolates have 93% similarity to , and phylogenetic trees constructed using Mega 7.0 also showed that OUL4 isolates are related to .
These results show that there is a difference in identification between biochemical testing with API kits and molecular analyses on LAB isolates from wild Sumatran orangutans. Based on 16S rRNA gene homology, the OUL4 LAB isolates from wild Sumatran orangutans have 93% homology to .
本研究旨在分离和鉴定野生苏门答腊猩猩体内的乳酸菌(LAB),以获取更多有关源自苏门答腊猩猩粪便的乳酸菌多样性的信息。
在位于亚齐南区的哥打拉夜国家公园苏阿夸贝利明研究站的野生森林地区,对三只约35岁的雌性猩猩进行粪便采样。猩猩粪便样本于早晨猩猩首次排便时采集。猩猩在树上,距离发现粪便的地面约12 - 15米。
使用API 50 CHL试剂盒进行的发酵测试表明,OUL4分离株被鉴定为ssp.,同一性值为73.5%。同源性分析表明,OUL4分离株与具有93%的相似性,使用Mega 7.0构建的系统发育树也表明OUL4分离株与相关。
这些结果表明,使用API试剂盒进行的生化测试与对野生苏门答腊猩猩的乳酸菌分离株进行的分子分析在鉴定上存在差异。基于16S rRNA基因同源性,来自野生苏门答腊猩猩的OUL4乳酸菌分离株与具有93%的同源性。