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杂草科学的群体基因组学方法

Population Genomic Approaches for Weed Science.

作者信息

Martin Sara L, Parent Jean-Sebastien, Laforest Martin, Page Eric, Kreiner Julia M, James Tracey

机构信息

Ottawa Research and Development Centre, Agriculture and Agri-Food Canada, Ottawa, ON K1A 0C6, Canada.

Saint-Jean-sur-Richelieu Research and Development Centre, Agriculture and Agri-Food Canada, Saint-Jean-sur-Richelieu, QC J3B 3E6, Canada.

出版信息

Plants (Basel). 2019 Sep 19;8(9):354. doi: 10.3390/plants8090354.

DOI:10.3390/plants8090354
PMID:31546893
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6783936/
Abstract

Genomic approaches are opening avenues for understanding all aspects of biological life, especially as they begin to be applied to multiple individuals and populations. However, these approaches typically depend on the availability of a sequenced genome for the species of interest. While the number of genomes being sequenced is exploding, one group that has lagged behind are weeds. Although the power of genomic approaches for weed science has been recognized, what is needed to implement these approaches is unfamiliar to many weed scientists. In this review we attempt to address this problem by providing a primer on genome sequencing and provide examples of how genomics can help answer key questions in weed science such as: (1) Where do agricultural weeds come from; (2) what genes underlie herbicide resistance; and, more speculatively, (3) can we alter weed populations to make them easier to control? This review is intended as an introduction to orient weed scientists who are thinking about initiating genome sequencing projects to better understand weed populations, to highlight recent publications that illustrate the potential for these methods, and to provide direction to key tools and literature that will facilitate the development and execution of weed genomic projects.

摘要

基因组学方法正在为理解生物生命的各个方面开辟道路,尤其是当它们开始应用于多个个体和群体时。然而,这些方法通常依赖于目标物种已测序基因组的可得性。虽然正在测序的基因组数量呈爆炸式增长,但有一类生物却落在了后面,那就是杂草。尽管基因组学方法对杂草科学的作用已得到认可,但许多杂草科学家对实施这些方法所需的条件并不熟悉。在本综述中,我们试图通过提供一份基因组测序入门指南来解决这个问题,并举例说明基因组学如何有助于回答杂草科学中的关键问题,例如:(1)农田杂草来自何处;(2)除草剂抗性的基因基础是什么;以及更具推测性的(3)我们能否改变杂草种群,使其更易于控制?本综述旨在为那些考虑启动基因组测序项目以更好地了解杂草种群的杂草科学家提供一个入门介绍,突出近期说明这些方法潜力的出版物,并为有助于杂草基因组项目开发和实施的关键工具及文献提供指导。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebdc/6783936/f5f4cbd04459/plants-08-00354-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebdc/6783936/3b2b212328d1/plants-08-00354-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebdc/6783936/f5f4cbd04459/plants-08-00354-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebdc/6783936/3b2b212328d1/plants-08-00354-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ebdc/6783936/f5f4cbd04459/plants-08-00354-g002.jpg

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Population Genomic Approaches for Weed Science.杂草科学的群体基因组学方法
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Standing genetic variation fuels rapid evolution of herbicide resistance in blackgrass.杂草的抗除草剂性快速进化源于其遗传变异。
Proc Natl Acad Sci U S A. 2023 Apr 18;120(16):e2206808120. doi: 10.1073/pnas.2206808120. Epub 2023 Apr 12.
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Common evolutionary trajectory of short life-cycle in Brassicaceae ruderal weeds.

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Multiple modes of convergent adaptation in the spread of glyphosate-resistant .草甘膦抗性的广泛传播中的多种趋同适应模式。
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