Ministry of Education Key Laboratory of Silviculture and Conservation, Forestry College, Beijing Forestry University, Beijing 100083, PR China.
Forestry Bureau of Wufeng County, Yichang, 443002, Hubei Province, PR China.
Tree Physiol. 2020 Jan 1;40(1):90-107. doi: 10.1093/treephys/tpz091.
AGAMOUS/SEEDSTICK (AG/STK) subfamily genes play crucial roles in the reproductive development of plants. However, most of our current knowledge of AG/STK subfamily genes is restricted to core eudicots and grasses, and the knowledge of ancestral exon-intron structures, expression patterns, protein-protein interaction patterns and functions of AG/STK subfamily genes remains unclear. To determine these, we isolated AG/STK subfamily genes (MawuAG1, MawuAG2 and MawuSTK) from a woody basal angiosperm Magnolia wufengensis (Magnoliaceae). MawuSTK arose from the gene duplication event occurring before the diversification of extant angiosperms, and MawuAG1 and MawuAG2 may result from a gene duplication event occurring before the divergence of Magnoliaceae and Lauraceae. Gene duplication led to apparent diversification in their expression and interaction patterns. It revealed that expression in both stamens and carpels likely represents the ancestral expression profiles of AG lineage genes, and expression of STK-like genes in stamens may have been lost soon after the appearance of the STK lineage. Moreover, AG/STK subfamily proteins may have immediately established interactions with the SEPALLATA (SEP) subfamily proteins following the emergence of the SEP subfamily; however, their interactions with the APETALA1/FRUITFULL subfamily proteins or themselves differ from those found in monocots and basal and core eudicots. MawuAG1 plays highly conserved roles in the determinacy of stamen, carpel and ovule identity, while gene duplication contributed to the functional diversification of MawuAG2 and MawuSTK. In addition, we investigated the evolutionary history of exon-intron structural changes of the AG/STK subfamily, and a novel splice-acceptor mode (GUU-AU) and the convergent evolution of N-terminal extension in the euAG and PLE subclades were revealed for the first time. These results further advance our understanding of ancestral AG/STK subfamily genes in terms of phylogeny, exon-intron structures, expression and interaction patterns, and functions, and provide strong evidence for the significance of gene duplication in the expansion and evolution of the AG/STK subfamily.
AGAMOUS/SEEDSTICK (AG/STK) 亚家族基因在植物的生殖发育中起着至关重要的作用。然而,我们目前对 AG/STK 亚家族基因的了解主要局限于核心真双子叶植物和禾本科植物,而 AG/STK 亚家族基因的祖先外显子-内含子结构、表达模式、蛋白质-蛋白质相互作用模式和功能的知识仍然不清楚。为了确定这些,我们从木本基生被子植物厚朴(Magnoliaceae)中分离出 AG/STK 亚家族基因(MawuAG1、MawuAG2 和 MawuSTK)。MawuSTK 是在现存被子植物多样化之前发生的基因复制事件产生的,而 MawuAG1 和 MawuAG2 可能是在木兰科和樟科分化之前发生的基因复制事件产生的。基因复制导致了它们的表达和相互作用模式的明显多样化。结果表明,在雄蕊和心皮中表达可能代表了 AG 谱系基因的祖先表达模式,而 STK 样基因在雄蕊中的表达可能在 STK 谱系出现后很快丢失。此外,AG/STK 亚家族蛋白可能在 SEP 亚家族出现后立即与 SEPALLATA (SEP) 亚家族蛋白建立相互作用;然而,它们与 APETALA1/FRUITFULL 亚家族蛋白或自身的相互作用与单子叶植物和基生及核心真双子叶植物中的相互作用不同。MawuAG1 在雄蕊、心皮和胚珠身份的确定性中发挥高度保守的作用,而基因复制导致了 MawuAG2 和 MawuSTK 的功能多样化。此外,我们研究了 AG/STK 亚家族中外显子-内含子结构变化的进化历史,首次揭示了 euAG 和 PLE 亚簇中新的剪接受体模式(GUU-AU)和 N 端延伸的趋同进化。这些结果进一步深入了解了祖先 AG/STK 亚家族基因在系统发育、外显子-内含子结构、表达和相互作用模式以及功能方面的情况,并为基因复制在 AG/STK 亚家族的扩张和进化中的重要性提供了有力证据。