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噬菌体φX174 A蛋白可切割单链DNA,并通过酪氨酰-dAMP磷酸二酯键与之共价结合。

Bacteriophage phi X174 A protein cleaves single-stranded DNA and binds to it covalently through a tyrosyl-dAMP phosphodiester bond.

作者信息

Sanhueza S, Eisenberg S

出版信息

J Virol. 1985 Feb;53(2):695-7. doi: 10.1128/JVI.53.2.695-697.1985.

DOI:10.1128/JVI.53.2.695-697.1985
PMID:3155802
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC254688/
Abstract

The phi X174 A protein cleaves single-stranded DNA and binds covalently to the 5'-phosphorylated end. To determine the nature of the covalent linkage and the amino acid involved, we used the A protein to cleave DNA synthesized in vitro with [alpha-32P]dATP to form the complex of A protein covalently linked to single-stranded DNA. The complex was then digested with DNase I, and the 32P-labeled A protein was isolated by electrophoresis on polyacrylamide gels. The isolated complex was treated extensively with trypsin, and the released peptide-oligonucleotide complexes were incubated with formic acid and diphenylamine (Burton reaction). The Burton reaction caused a transfer of the labeled phosphate from dAMP to the peptide. The labeled phosphopeptides were isolated and hydrolyzed, revealing a linkage of the phosphate to a tyrosine. These results indicate that the A protein cleaves single-stranded DNA and binds covalently to the 5'-phosphorylated terminus by a tyrosyl-dAMP phosphodiester bond.

摘要

噬菌体φX174 A蛋白可切割单链DNA,并与5'-磷酸化末端共价结合。为了确定共价连接的性质以及所涉及的氨基酸,我们使用A蛋白切割用[α-32P]dATP体外合成的DNA,以形成与单链DNA共价连接的A蛋白复合物。然后用DNase I消化该复合物,并通过聚丙烯酰胺凝胶电泳分离出32P标记的A蛋白。将分离出的复合物用胰蛋白酶进行充分处理,释放出的肽-寡核苷酸复合物与甲酸和二苯胺一起孵育(伯顿反应)。伯顿反应导致标记的磷酸基团从dAMP转移到肽上。分离并水解标记的磷酸肽,结果显示磷酸基团与酪氨酸相连。这些结果表明,A蛋白通过酪氨酰-dAMP磷酸二酯键切割单链DNA并与5'-磷酸化末端共价结合。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0b16/254688/d9a9d54c72a0/jvirol00125-0362-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0b16/254688/d437fc9a9442/jvirol00125-0362-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0b16/254688/d9a9d54c72a0/jvirol00125-0362-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0b16/254688/d437fc9a9442/jvirol00125-0362-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0b16/254688/d9a9d54c72a0/jvirol00125-0362-b.jpg

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1
Bacteriophage phi X174 A protein cleaves single-stranded DNA and binds to it covalently through a tyrosyl-dAMP phosphodiester bond.噬菌体φX174 A蛋白可切割单链DNA,并通过酪氨酰-dAMP磷酸二酯键与之共价结合。
J Virol. 1985 Feb;53(2):695-7. doi: 10.1128/JVI.53.2.695-697.1985.
2
Cleavage of single-stranded DNA by the varphiX174 A protein: The A-single-stranded DNA covalent linkage.phiX174 A 蛋白对单链 DNA 的切割:A-单链 DNA 共价连接。
Proc Natl Acad Sci U S A. 1984 Jul;81(14):4285-9. doi: 10.1073/pnas.81.14.4285.
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The bond in the bacteriophage phi X174 gene A protein--DNA complex is a tyrosyl-5'-phosphate ester.噬菌体φX174基因A蛋白与DNA复合物中的键是酪氨酰-5'-磷酸酯。
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4
Gene A protein of bacteriophage phi X174 is a highly specific single-strand nuclease and binds via a tyrosyl residue to DNA after cleavage.噬菌体φX174的基因A蛋白是一种高度特异性的单链核酸酶,切割后通过一个酪氨酰残基与DNA结合。
Adv Exp Med Biol. 1984;179:221-30. doi: 10.1007/978-1-4684-8730-5_23.
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Analysis of bacteriophage phi X174 gene A protein-mediated termination and reinitiation of phi X DNA synthesis. II. Structural characterization of the covalent phi X A protein-DNA complex.噬菌体φX174基因A蛋白介导的φX DNA合成终止与重新起始的分析。II. 共价φX A蛋白-DNA复合物的结构表征。
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Two juxtaposed tyrosyl-OH groups participate in phi X174 gene A protein catalysed cleavage and ligation of DNA.两个并列的酪氨酰羟基参与了φX174基因A蛋白催化的DNA切割与连接过程。
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Cleavage of phi X174 single-stranded DNA by gene A protein and formation of a tight protein-DNA complex.基因A蛋白对φX174单链DNA的切割及紧密蛋白-DNA复合物的形成。
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Cleavage and circularization of single-stranded DNA: a novel enzymatic activity of phi X174 A* protein.单链DNA的切割与环化:噬菌体φX174 A*蛋白的一种新酶活性
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Bacteriophage phi X 174 A protein binds in vitro to the phage phi X 174 DNA by a phosphodiester bond via a tyrosine residue.
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本文引用的文献

1
Cleavage of single-stranded DNA by the varphiX174 A protein: The A-single-stranded DNA covalent linkage.phiX174 A 蛋白对单链 DNA 的切割:A-单链 DNA 共价连接。
Proc Natl Acad Sci U S A. 1984 Jul;81(14):4285-9. doi: 10.1073/pnas.81.14.4285.
2
Structure of the linkage between adenovirus DNA and the 55,000 molecular weight terminal protein.腺病毒DNA与55,000分子量末端蛋白之间的连接结构
J Mol Biol. 1981 Jan 15;145(2):319-37. doi: 10.1016/0022-2836(81)90208-4.
3
Cleavage of phi X174 single-stranded DNA by gene A protein and formation of a tight protein-DNA complex.
SSB蛋白对φX基因A蛋白和A*蛋白切割单链DNA的影响。
Nucleic Acids Res. 1986 Feb 25;14(4):1845-61. doi: 10.1093/nar/14.4.1845.
4
The FLP recombinase of the Saccharomyces cerevisiae 2 microns plasmid attaches covalently to DNA via a phosphotyrosyl linkage.酿酒酵母2微米质粒的FLP重组酶通过磷酸酪氨酸连接与DNA共价连接。
Mol Cell Biol. 1985 Nov;5(11):3274-9. doi: 10.1128/mcb.5.11.3274-3279.1985.
5
Evidence for covalent attachment of the adeno-associated virus (AAV) rep protein to the ends of the AAV genome.腺相关病毒(AAV)rep蛋白与AAV基因组末端共价连接的证据。
J Virol. 1990 Dec;64(12):6204-13. doi: 10.1128/JVI.64.12.6204-6213.1990.
6
The coat protein of the yeast double-stranded RNA virus L-A attaches covalently to the cap structure of eukaryotic mRNA.酵母双链RNA病毒L-A的外壳蛋白与真核生物mRNA的帽结构共价结合。
Mol Cell Biol. 1992 Aug;12(8):3390-8. doi: 10.1128/mcb.12.8.3390-3398.1992.
基因A蛋白对φX174单链DNA的切割及紧密蛋白-DNA复合物的形成。
J Virol. 1980 Aug;35(2):409-13. doi: 10.1128/JVI.35.2.409-413.1980.
4
Studies on the phi X174 gene A protein-mediated termination of leading strand DNA synthesis.关于φX174基因A蛋白介导的前导链DNA合成终止的研究。
J Biol Chem. 1983 Jan 10;258(1):529-37.
5
DNA is linked to the rat liver DNA nicking-closing enzyme by a phosphodiester bond to tyrosine.DNA通过磷酸二酯键与大鼠肝脏DNA切口封闭酶的酪氨酸相连。
J Biol Chem. 1981 May 25;256(10):4805-9.
6
The mechanism of replication of phi X 174. XVIII. Gene A and A* proteins of phi X 174 bind tightly to phi X 174 replicative form DNA.
Biochim Biophys Acta. 1981 Mar 26;653(1):52-60. doi: 10.1016/0005-2787(81)90103-9.
7
Analysis of bacteriophage phi X174 gene A protein-mediated termination and reinitiation of phi X DNA synthesis. II. Structural characterization of the covalent phi X A protein-DNA complex.噬菌体φX174基因A蛋白介导的φX DNA合成终止与重新起始的分析。II. 共价φX A蛋白-DNA复合物的结构表征。
J Biol Chem. 1984 Aug 25;259(16):10556-68.
8
The bond in the bacteriophage phi X174 gene A protein--DNA complex is a tyrosyl-5'-phosphate ester.噬菌体φX174基因A蛋白与DNA复合物中的键是酪氨酰-5'-磷酸酯。
FEBS Lett. 1984 Aug 6;173(2):351-6. doi: 10.1016/0014-5793(84)80804-2.
9
Covalent bonds between protein and DNA. Formation of phosphotyrosine linkage between certain DNA topoisomerases and DNA.蛋白质与DNA之间的共价键。某些DNA拓扑异构酶与DNA之间磷酸酪氨酸连接的形成。
J Biol Chem. 1980 Jun 25;255(12):5560-5.
10
Rep protein as a helicase in an active, isolatable replication fork of duplex phi X174 DNA.Rep蛋白作为双链φX174 DNA活性、可分离复制叉中的解旋酶。
J Biol Chem. 1981 May 25;256(10):5294-8.