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构象灵活性驱动 TAC125 球蛋白的冷适应。

Conformational Flexibility Drives Cold Adaptation in TAC125 Globins.

机构信息

Institute of Biosciences and BioResources (IBBR), CNR, Napoli, Italy.

Department of Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, Napoli, Italy.

出版信息

Antioxid Redox Signal. 2020 Feb 20;32(6):396-411. doi: 10.1089/ars.2019.7887. Epub 2019 Nov 11.

Abstract

Temperature is one of the most important drivers in shaping protein adaptations. Many biochemical and physiological processes are influenced by temperature. Proteins and enzymes from organisms living at low temperature are less stable in comparison to high-temperature adapted proteins. The lower stability is generally due to greater conformational flexibility. Adaptive changes in the structure of cold-adapted proteins may occur at subunit interfaces, distant from the active site, thus producing energy changes associated with conformational transitions transmitted to the active site by allosteric modulation, valid also for monomeric proteins in which tertiary structural changes may play an essential role. Despite efforts, the current experimental and computational methods still fail to produce general principles on protein evolution, since many changes are protein and species dependent. Environmental constraints or other biological cellular signals may override the ancestral information included in the structure of the protein, thus introducing inaccuracy in estimates and predictions on the evolutionary adaptations of proteins in response to cold adaptation. In this review, we describe the studies and approaches used to investigate stability and flexibility in the cold-adapted globins of the Antarctic marine bacterium TAC125. In fact, future research directions will be prescient on more detailed investigation of cold-adapted proteins and the role of fluctuations between different conformational states.

摘要

温度是塑造蛋白质适应性的最重要因素之一。许多生化和生理过程都受到温度的影响。与高温适应的蛋白质相比,生活在低温下的生物体的蛋白质和酶不太稳定。较低的稳定性通常是由于更大的构象灵活性。低温适应蛋白结构的适应性变化可能发生在亚基界面上,远离活性部位,从而产生与构象转变相关的能量变化,这种构象转变通过变构调节传递到活性部位,这对单体蛋白也是如此,在单体蛋白中,三级结构变化可能起着至关重要的作用。尽管付出了努力,但目前的实验和计算方法仍然无法产生关于蛋白质进化的一般原理,因为许多变化是蛋白质和物种依赖性的。环境限制或其他生物细胞信号可能会覆盖包含在蛋白质结构中的祖先信息,从而导致对蛋白质在低温适应下的进化适应性的估计和预测产生不准确。在这篇综述中,我们描述了用于研究南极海洋细菌 TAC125 的冷适应球蛋白的稳定性和灵活性的研究和方法。事实上,未来的研究方向将是对冷适应蛋白的更详细研究以及不同构象状态之间波动的作用进行有远见的研究。

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