Dipartimento di Scienze Matematiche, Fisiche e Informatiche, Università di Parma, Parco Area delle Scienze 7/A, 43124 Parma, Italy.
Center for Nano Science and Technology@PoliMi, Istituto Italiano di Tecnologia, via G. Pascoli 70/3, 20133 Milano, Italy.
Int J Mol Sci. 2021 Mar 8;22(5):2740. doi: 10.3390/ijms22052740.
The recently identified nonsymbiotic hemoglobin gene of the legume possesses unique properties as it generates four alternative splice forms encoding proteins with one or two heme domains. Here we investigate the ligand binding kinetics of MtGlb1-2.1 and MtGlb1-2.4, bearing two hemes and one heme, respectively. Unexpectedly, the overall time-course of ligand rebinding was unusually fast. Thus, we complemented nanosecond laser flash photolysis kinetics with data collected with a hybrid femtosecond-nanosecond pump-probe setup. Most photodissociated ligands are rebound geminately within a few nanoseconds, which leads to rates of the bimolecular rebinding to pentacoordinate species in the 10 Ms range. Binding of the distal histidine to the heme competes with CO rebinding with extremely high rates ( ~ 10 s). Histidine dissociation from the heme occurs with comparable rates, thus resulting in moderate equilibrium binding constants ( ~ 1). The rate constants for ligation and deligation of distal histidine to the heme are the highest reported for any plant or vertebrate globin. The combination of microscopic rates results in unusually high overall ligand binding rate constants, a fact that contributes to explaining at the mechanistic level the extremely high reactivity of these proteins toward the physiological ligands oxygen, nitric oxide and nitrite.
最近发现的豆科植物非共生血红蛋白基因具有独特的性质,因为它产生了四种替代的剪接形式,编码具有一个或两个血红素结构域的蛋白质。在这里,我们研究了具有两个血红素和一个血红素的 MtGlb1-2.1 和 MtGlb1-2.4 的配体结合动力学。出乎意料的是,配体再结合的整个时间过程异常快。因此,我们用混合飞秒-纳秒泵浦探测装置收集的数据补充了纳秒激光闪光光解动力学的数据。大多数光解的配体在几纳秒内重新结合成双分子,这导致双分子与五配位物种的结合速率达到 10 Ms 范围内。远端组氨酸与血红素的结合与 CO 再结合具有极高的速率(10 s)竞争。血红素上的组氨酸从血红素上解离的速率相当,因此导致中等平衡结合常数(1)。与任何植物或脊椎动物球蛋白相比,远端组氨酸与血红素的配位和去配位的速率常数是最高的。微观速率的结合导致了异常高的总体配体结合速率常数,这一事实有助于从机制水平解释这些蛋白质对生理配体氧、一氧化氮和亚硝酸盐的极高反应性。