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高分辨率蛋白晶体学阐明 CMP-唾液酸合酶的催化循环。

Catalytic Cycle of CMP-Sialic Acid Synthetase Illustrated by High-Resolution Protein Crystallography.

机构信息

Department of Chemistry, University of California, Davis, California 95616, United States.

Department of Molecular and Cellular Biology, University of California, Davis, California 95616, United States.

出版信息

Biochemistry. 2020 Sep 1;59(34):3157-3168. doi: 10.1021/acs.biochem.9b00517. Epub 2019 Oct 4.

Abstract

Cytidine 5'-monophosphate (CMP)-sialic acid synthetase (CSS) is an essential enzyme involved in the biosynthesis of carbohydrates and glycoconjugates containing sialic acids, a class of α-keto acids that are generally terminal key recognition residues by many proteins that play important biological and pathological roles. The CSS from (NmCSS) has been commonly used with other enzymes such as sialic acid aldolase and/or sialyltransferase in synthesizing a diverse array of compounds containing sialic acid or its naturally occurring and non-natural derivatives. To better understand its catalytic mechanism and substrate promiscuity, four NmCSS crystal structures trapped at various stages of the catalytic cycle with bound substrates, substrate analogues, and products have been obtained and are presented here. These structures suggest a mechanism for an "open" and "closed" conformational transition that occurs as sialic acid binds to the NmCSS/cytidine-5'-triphosphate (CTP) complex. The closed conformation positions critical residues to help facilitate the nucleophilic attack of sialic acid C2-OH to the α-phosphate of CTP, which is also aided by two observed divalent cations. Product formation drives the active site opening, promoting the release of products.

摘要

胞苷 5'-单磷酸 (CMP)-唾液酸合成酶 (CSS) 是参与碳水化合物和糖缀合物生物合成的必需酶,这些糖缀合物含有唾液酸,唾液酸是一类 α-酮酸,通常是许多具有重要生物学和病理学作用的蛋白质的末端关键识别残基。来自 (NmCSS)的 CSS 通常与唾液酸醛缩酶和/或唾液酸转移酶等其他酶一起用于合成含有唾液酸或其天然和非天然衍生物的各种化合物。为了更好地了解其催化机制和底物的混杂性,已经获得了处于催化循环各个阶段的四个 NmCSS 晶体结构,其中结合了底物、底物类似物和产物,并在此呈现。这些结构表明了一种“开放”和“封闭”构象转变的机制,这种转变发生在唾液酸与 NmCSS/胞苷-5'-三磷酸 (CTP) 复合物结合时。封闭构象使关键残基定位,有助于促进唾液酸 C2-OH 对 CTP 的α-磷酸的亲核攻击,这也得到了两个观察到的二价阳离子的帮助。产物形成驱动活性位点打开,促进产物释放。

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