从新加坡室内空气样本中分离出的藤黄微球菌菌株SGAir0127的全基因组序列
Complete Genome Sequence of Micrococcus luteus Strain SGAir0127, Isolated from Indoor Air Samples from Singapore.
作者信息
Kutmutia Shruti Ketan, Drautz-Moses Daniela I, Uchida Akira, Purbojati Rikky W, Wong Anthony, Kushwaha Kavita K, Putra Alexander, Premkrishnan Balakrishnan N V, Heinle Cassie E, Vettath Vineeth Kodengil, Junqueira Ana Carolina M, Schuster Stephan C
机构信息
Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore.
Departamento de Genética, Instituto de Biologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.
出版信息
Microbiol Resour Announc. 2019 Oct 10;8(41):e00646-19. doi: 10.1128/MRA.00646-19.
Abstract
strain SGAir0127 was isolated from indoor air samples collected in Singapore. The assembly, based on single-molecule real-time sequencing reads, resulted in two contigs, one chromosomal contig with a length of 2.57 Mbp and one nonchromosomal contig of 8.68 kbp. The genome has a total of 2,564 genes.
摘要
菌株SGAir0127是从新加坡采集的室内空气样本中分离出来的。基于单分子实时测序读数进行组装，得到了两个重叠群，一个长度为2.57 Mbp的染色体重叠群和一个8.68 kbp的非染色体重叠群。该基因组共有2564个基因。
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本文引用的文献
1
Taxonomy, Physiology, and Natural Products of Actinobacteria.放线菌的分类学、生理学与天然产物
Microbiol Mol Biol Rev. 2015 Nov 25;80(1):1-43. doi: 10.1128/MMBR.00019-15. Print 2016 Mar.
2
Microbial species delineation using whole genome sequences.利用全基因组序列进行微生物物种划分。
Nucleic Acids Res. 2015 Aug 18;43(14):6761-71. doi: 10.1093/nar/gkv657. Epub 2015 Jul 6.
3
RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes.RASTtk：一种用于构建定制注释管道和批量注释基因组的RAST算法的模块化可扩展实现。
Sci Rep. 2015 Feb 10;5:8365. doi: 10.1038/srep08365.
4
Prokka: rapid prokaryotic genome annotation.Prokka：快速的原核生物基因组注释。
Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
5
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).SEED 与利用子系统技术进行快速微生物基因组注释（RAST）。
Nucleic Acids Res. 2014 Jan;42(Database issue):D206-14. doi: 10.1093/nar/gkt1226. Epub 2013 Nov 29.
6
Ecology of food microorganisms.食品微生物生态学。
Microb Ecol. 1986 Mar;12(1):15-30. doi: 10.1007/BF02153219.
7
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.非杂交、基于长读长 SMRT 测序数据的完成微生物基因组组装。
Nat Methods. 2013 Jun;10(6):563-9. doi: 10.1038/nmeth.2474. Epub 2013 May 5.
8
A phylum-level bacterial phylogenetic marker database.一门细菌系统发育标志数据库。
Mol Biol Evol. 2013 Jun;30(6):1258-62. doi: 10.1093/molbev/mst059. Epub 2013 Mar 21.
9
Genome sequence of the Fleming strain of Micrococcus luteus, a simple free-living actinobacterium.微球菌弗莱明菌株基因组序列，一种简单的自由生活放线菌。
J Bacteriol. 2010 Feb;192(3):841-60. doi: 10.1128/JB.01254-09. Epub 2009 Nov 30.
10
The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
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