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利用视频显微镜和 DNA 条码对太平洋浮游动物的多样性和生命周期分析:水螅虫纲。

Diversity and life-cycle analysis of Pacific Ocean zooplankton by videomicroscopy and DNA barcoding: Hydrozoa.

机构信息

Department of Developmental and Cell Biology, University of California, Irvine, Irvine, CA, United States of America.

Crystal Cove Conservancy, Newport Coast, CA, United States of America.

出版信息

PLoS One. 2019 Oct 25;14(10):e0218848. doi: 10.1371/journal.pone.0218848. eCollection 2019.

Abstract

Most, but not all cnidarian species in the class Hydrozoa have a life cycle in which a colonial, asexually reproducing hydroid phase alternates with a free-swimming, sexually reproducing medusa phase. They are not well known, in part because many of them are microscopic, at least in the medusa phase. Matching the two phases has previously required rearing of the organism from one phase to another, which has not often been possible. Here we show that DNA barcoding makes it possible to easily link life-cycle phases without the need for laboratory rearing. Hydrozoan medusae were collected by zooplankton tows in Newport Bay and the Pacific Ocean near Newport Beach, California, and hydroid colonies were collected from solid substrates in the same areas. Specimens were documented by videomicroscopy, preserved in ethanol, and sent to the Canadian Centre for DNA Barcoding at the University of Guelph, Ontario, Canada for sequencing of the COI DNA barcode. In the order Anthoathecata (athecate hydroids), DNA barcoding allowed for the discrimination between the medusae of eight putative species of Bougainvillia, and the hydroid stages were documented for two of these. The medusae of three putative species of Amphinema were identified, and the hydroid stages were identified for two of them. DNA barcodes were obtained from medusae of one species of Cladonema, one adult of the by-the wind Sailor, Velella velella, five putative species of Corymorpha with the matching hydroid phase for one; and Coryne eximia, Turritopsis dohrnii and Turritopsis nutricula with the corresponding hydroid phases. The actinula larvae and hydroid for the pink-hearted hydroid Ectopleura crocea were identified and linked by DNA barcoding. In the order Leptothecata (thecate hydroids) medusae were identified for Clytia elsaeoswaldae, Clytia gracilis and Clytia sp. 701 AC and matched with the hydroid phases for the latter two species. Medusae were matched with the hydroid phases for two species of Obelia (including O. dichotoma) and Eucheilota bakeri. Obelia geniculata was collected as a single hydroid. DNA barcodes were obtained for hydroids of Orthopyxis everta and three other species of Orthopyxis. One member of the family Solmarisidae, representing the order Narcomedusae, and one member (Liriope tetraphylla) of the order Trachymedusae were recognized as medusae. The results show the utility of DNA barcoding for matching life-cycle stages as well as for documenting the diversity of this class of organisms.

摘要

大多数水螅类(Hydrozoa)物种在其生活史中具有一个特征,即一个群体的、无性繁殖的水螅体阶段与一个自由游动的、有性繁殖的水母体阶段交替出现。它们并不广为人知,部分原因是许多水螅类物种是微观的,至少在水母体阶段是如此。以前,为了将生物体从一个阶段匹配到另一个阶段,需要进行实验室饲养,但这种方法并不总是可行。在这里,我们展示了 DNA 条形码技术可以轻松地将生命周期阶段联系起来,而无需进行实验室饲养。水螅类水母通过浮游动物拖网在加利福尼亚州纽波特海滩的纽波特湾和太平洋中采集,水螅群体则从同一地区的固体基质中采集。标本通过视频显微镜记录,保存在乙醇中,并寄往加拿大安大略省圭尔夫大学的加拿大 DNA 条形码中心,对 COI DNA 条形码进行测序。在 Anthoathecata 目(无鞘水螅)中,DNA 条形码允许对 8 种推定的 Bougainvillia 物种的水母进行区分,并且对其中两种的水螅阶段进行了记录。鉴定出了 3 种推定的 Amphinema 物种的水母,并且对其中两种的水螅阶段进行了鉴定。从一种 Cladonema 物种的水母、一种 Velella velella 帆水母、具有匹配水螅阶段的 5 种推定的 Corymorpha 物种中的一种以及 Coryne eximia、Turritopsis dohrnii 和 Turritopsis nutricula 物种中获得了 DNA 条形码。通过 DNA 条形码鉴定出了粉红色心形水螅 Ectopleura crocea 的浮浪幼虫和水螅,并将它们联系起来。在 Leptothecata 目(有鞘水螅)中,鉴定出了 Clytia elsaeoswaldae、Clytia gracilis 和 Clytia sp. 701 AC 的水母,并与后两种的水螅阶段相匹配。鉴定出了两种 Obelia(包括 O. dichotoma)和 Eucheilota bakeri 的水母与水螅阶段相匹配。Obelia geniculata 仅作为单个水螅采集。获得了 Orthopyxis everta 和其他三种 Orthopyxis 物种的水螅 DNA 条形码。一个 Solmarisidae 科的成员,代表 Narcomedusae 目,以及一个 Trachymedusae 目的成员(Liriope tetraphylla)被鉴定为水母。结果表明,DNA 条形码技术对于匹配生命周期阶段以及记录该类生物的多样性非常有用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9cda/6814237/38152aece2cf/pone.0218848.g001.jpg

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