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真菌代谢谱数据集不受菌株长期保存的影响。

Fungal metabolic profile dataset was not influenced by long-term preservation of strains.

作者信息

Veselská Tereza, Kolařík Miroslav

机构信息

Laboratory of Fungal Genetics and Metabolism, Institute of Microbiology, Czech Academy of Sciences (CAS), Vídeňská 1083, CZ-14220 Prague, Czech Republic.

Department of Botany, Faculty of Science, Charles University, Benátská 2, CZ-12801 Prague, Czech Republic.

出版信息

Data Brief. 2019 Sep 26;27:104568. doi: 10.1016/j.dib.2019.104568. eCollection 2019 Dec.

DOI:10.1016/j.dib.2019.104568
PMID:31687429
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6820071/
Abstract

Comparative ecophysiology is highly valuable approach to reveal adaptive traits linked with specific ecological niches. Although long-term preserved fungal isolates are often used for analyses, only sparse data is available about the effect of such handling on fungal physiology. The purpose of our data is to show the effect of long-term preservation of fungal strains on their metabolic profiles. This data is related to research paper "Adaptive traits of bark and ambrosia beetle-associated fungi" (Veselská et al., 2019). Biolog MicroPlates™ for Filamentous fungi were used to compare metabolic profiles between freshly isolated and long-term preserved strains of two species. Additionally, carbon utilization profiles of 35 species were assessed, including plant pathogen and three ambrosia species. Data also shows differences in carbon utilization profiles among diverse ecology types presented in the genus .

摘要

比较生态生理学是揭示与特定生态位相关的适应性状的极有价值的方法。尽管长期保存的真菌分离株常被用于分析,但关于这种处理对真菌生理学的影响,仅有稀少的数据。我们的数据目的是展示真菌菌株长期保存对其代谢谱的影响。这些数据与研究论文《树皮甲虫和食菌小蠹相关真菌的适应性状》(韦塞尔斯卡等人,2019年)相关。使用丝状真菌的Biolog微孔板™来比较两个物种的新鲜分离株和长期保存菌株之间的代谢谱。此外,评估了35个物种的碳利用谱,包括植物病原体和三种食菌小蠹物种。数据还显示了该属中呈现的不同生态类型之间碳利用谱的差异。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8b66/6820071/3b648c73dc48/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8b66/6820071/3b648c73dc48/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8b66/6820071/3b648c73dc48/gr1.jpg

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本文引用的文献

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Mycologia. 2017;109(2):185-199. doi: 10.1080/00275514.2017.1303861. Epub 2017 Apr 24.
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Morphological and molecular characterisation of Geosmithia species on European elms.欧洲榆树上格氏霉属物种的形态学和分子特征
Fungal Biol. 2015 Nov;119(11):1063-1074. doi: 10.1016/j.funbio.2015.08.003. Epub 2015 Aug 13.
3
Vector affinity and diversity of Geosmithia fungi living on subcortical insects inhabiting Pinaceae species in central and northeastern Europe.
生活在中北欧松科植物上的内生真菌 Geosmithia 的载体亲和性和多样性。
Microb Ecol. 2013 Oct;66(3):682-700. doi: 10.1007/s00248-013-0228-x. Epub 2013 Apr 27.
4
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Mycologia. 2011 Mar-Apr;103(2):325-32. doi: 10.3852/10-124. Epub 2010 Oct 1.
5
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Fungal Biol. 2010 Aug;114(8):676-89. doi: 10.1016/j.funbio.2010.06.005. Epub 2010 Jun 15.
6
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