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对欧洲云杉树皮甲虫主要酵母共生体基因组的洞察

Insight into the genomes of dominant yeast symbionts of European spruce bark beetle, .

作者信息

Cheng Tian, Veselská Tereza, Křížková Barbora, Švec Karel, Havlíček Václav, Stadler Marc, Kolařík Miroslav

机构信息

Laboratory of Fungal Genetics and Metabolism, Institute of Microbiology, Czech Academy of Sciences, Praha, Czechia.

Department of Microbial Drugs, Helmholtz Centre for Infection Research, Braunschweig, Germany.

出版信息

Front Microbiol. 2023 Apr 3;14:1108975. doi: 10.3389/fmicb.2023.1108975. eCollection 2023.

DOI:10.3389/fmicb.2023.1108975
PMID:37077248
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10106607/
Abstract

Spruce bark beetle s can trigger outbreaks on spruce that results in significant losses in the forest industry. It has been suggested that symbiotic microorganisms inhabiting the gut of bark beetles facilitate the colonization of plant tissues as they play a role in the detoxification of plant secondary metabolites, degrade plant cell wall and ameliorate beetle's nutrition. In this study, we sequenced and functionally annotated the genomes of five yeasts , sp., , , and isolated from the gut of . Genome analysis identified 5314, 7050, 5722, 5502, and 5784 protein coding genes from , sp., , , and , respectively. Protein-coding sequences were classified into biological processes, cellular and molecular function based on gene ontology terms enrichment. Kyoto Encyclopedia of Genes and Genomes (KEGG) annotation was used to predict gene functions. All analyzed yeast genomes contain full pathways for the synthesis of essential amino acids and vitamin B6, which have nutritional importance to beetle. Furthermore, their genomes contain diverse gene families related to the detoxification processes. The prevalent superfamilies are aldo-keto reductase, ATP-binding cassette and the major facilitator transporters. The phylogenetic relationships of detoxification-related enzymes aldo-keto reductase, and cytochrome P450 monooxygenase, and ATP-binding cassette are presented. Genome annotations also revealed presence of genes active in lignocellulose degradation. analyses did not confirm enzymatic endolytic degradation of lignocellulose; however, all species can utilize and pectin and produce a large spectrum of exolytic enzymes attacking cellulose, chitin, and lipids.

摘要

云杉树皮甲虫会引发云杉的虫灾,给林业造成重大损失。有人提出,栖息在树皮甲虫肠道内的共生微生物有助于植物组织的定殖,因为它们在植物次生代谢产物的解毒过程中发挥作用,能降解植物细胞壁并改善甲虫的营养状况。在本研究中,我们对从云杉树皮甲虫肠道中分离出的5种酵母(分别为[酵母名称1]、[酵母名称2]、[酵母名称3]、[酵母名称4]和[酵母名称5])的基因组进行了测序和功能注释。基因组分析分别从[酵母名称1]、[酵母名称2]、[酵母名称3]、[酵母名称4]和[酵母名称5]中鉴定出5314、7050、5722、5502和5784个蛋白质编码基因。基于基因本体术语富集,将蛋白质编码序列分类为生物过程、细胞和分子功能。使用京都基因与基因组百科全书(KEGG)注释来预测基因功能。所有分析的酵母基因组都包含合成必需氨基酸和维生素B6的完整途径,这对甲虫具有营养重要性。此外,它们的基因组包含与解毒过程相关的不同基因家族。普遍存在的超家族是醛酮还原酶、ATP结合盒和主要促进剂转运蛋白。展示了解毒相关酶醛酮还原酶、细胞色素P450单加氧酶和ATP结合盒的系统发育关系。基因组注释还揭示了在木质纤维素降解中起作用的基因的存在。[具体分析]未证实木质纤维素的酶促内切降解;然而,所有物种都可以利用[具体物质]和果胶,并产生一系列攻击纤维素、几丁质和脂质的外切酶。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7613/10106607/dc0f3e6f7da2/fmicb-14-1108975-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7613/10106607/fe37e64a5bc5/fmicb-14-1108975-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7613/10106607/1fdb94e97aaf/fmicb-14-1108975-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7613/10106607/66513cfd8a3d/fmicb-14-1108975-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7613/10106607/20ded417a430/fmicb-14-1108975-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7613/10106607/e5a58d3be57b/fmicb-14-1108975-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7613/10106607/dc0f3e6f7da2/fmicb-14-1108975-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7613/10106607/fe37e64a5bc5/fmicb-14-1108975-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7613/10106607/1fdb94e97aaf/fmicb-14-1108975-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7613/10106607/66513cfd8a3d/fmicb-14-1108975-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7613/10106607/20ded417a430/fmicb-14-1108975-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7613/10106607/e5a58d3be57b/fmicb-14-1108975-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7613/10106607/dc0f3e6f7da2/fmicb-14-1108975-g006.jpg

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