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基于 DNA 甲基化panel 的血液液体活检对主要男性癌症类型的早期检测。

Early detection of the major male cancer types in blood-based liquid biopsies using a DNA methylation panel.

机构信息

Cancer Biology & Epigenetics Group-Research Center, Portuguese Oncology Institute of Porto (CI-IPOP), LAB 3, F Bdg, 1st floor Rua Dr. António Bernardino de Almeida, 4200-072, Porto, Portugal.

Master in Oncology, Institute of Biomedical Sciences Abel Salazar-University of Porto (ICBAS-UP), Rua de Jorge Viterbo Ferreira no. 228, 4050-313, Porto, Portugal.

出版信息

Clin Epigenetics. 2019 Dec 2;11(1):175. doi: 10.1186/s13148-019-0779-x.

Abstract

BACKGROUND

Lung (LC), prostate (PCa) and colorectal (CRC) cancers are the most incident in males worldwide. Despite recent advances, optimal population-based cancer screening methods remain an unmet need. Due to its early onset, cancer specificity and accessibility in body fluids, aberrant DNA promoter methylation might be a valuable minimally invasive tool for early cancer detection. Herein, we aimed to develop a minimally invasive methylation-based test for simultaneous early detection of LC, PCa and CRC in males, using liquid biopsies.

RESULTS

Circulating cell-free DNA was extracted from 102 LC, 121 PCa and 100 CRC patients and 136 asymptomatic donors' plasma samples. Sodium-bisulfite modification and whole-genome amplification was performed. Promoter methylation levels of APC, FOXA1, GSTP1, HOXD3, RARβ2, RASSF1A, SEPT9 and SOX17 were assessed by multiplex quantitative methylation-specific PCR. SEPT9 and SOX17 were the only biomarkers shared by all three cancer types, although they detected CRC with limited sensitivity. A "PanCancer" panel (FOXA1, RARβ2 and RASSF1A) detected LC and PCa with 64% sensitivity and 70% specificity, complemented with "CancerType" panel (GSTP1 and SOX17) which discriminated between LC and PCa with 93% specificity, but with modest sensitivity. Moreover, a HOXD3 and RASSF1A panel discriminated small cell lung carcinoma from non-small cell lung carcinoma with 75% sensitivity, 88% specificity, 6.5 LR+ and 0.28 LR-. An APC and RASSF1A panel independently predicted disease-specific mortality in LC patients.

CONCLUSIONS

We concluded that a DNA methylation-based test in liquid biopsies might enable minimally invasive screening of LC and PCa, improving patient compliance and reducing healthcare costs. Moreover, it might assist in LC subtyping and prognostication.

摘要

背景

肺癌(LC)、前列腺癌(PCa)和结直肠癌(CRC)是全球男性中发病率最高的癌症。尽管最近取得了进展,但仍需要最佳的基于人群的癌症筛查方法。由于其早期发病、癌症特异性和在体液中的可及性,异常的 DNA 启动子甲基化可能是一种有价值的微创工具,可用于早期癌症检测。在此,我们旨在开发一种基于微创的甲基化检测方法,用于通过液体活检同时早期检测男性的 LC、PCa 和 CRC。

结果

从 102 例 LC、121 例 PCa 和 100 例 CRC 患者以及 136 例无症状供体的血浆样本中提取循环无细胞 DNA。进行亚硫酸氢盐修饰和全基因组扩增。通过多重定量甲基化特异性 PCR 评估 APC、FOXA1、GSTP1、HOXD3、RARβ2、RASSF1A、SEPT9 和 SOX17 的启动子甲基化水平。SEPT9 和 SOX17 是所有三种癌症类型共有的唯一生物标志物,尽管它们对 CRC 的检测灵敏度有限。“PanCancer”面板(FOXA1、RARβ2 和 RASSF1A)检测 LC 和 PCa 的灵敏度为 64%,特异性为 70%,与“CancerType”面板(GSTP1 和 SOX17)相结合可区分 LC 和 PCa,特异性为 93%,但灵敏度适中。此外,HOXD3 和 RASSF1A 面板可区分小细胞肺癌和非小细胞肺癌,灵敏度为 75%,特异性为 88%,6.5 LR+和 0.28 LR-。APC 和 RASSF1A 面板可独立预测 LC 患者的疾病特异性死亡率。

结论

我们得出结论,液体活检中的基于 DNA 甲基化的检测可能能够对 LC 和 PCa 进行微创筛查,提高患者的依从性并降低医疗保健成本。此外,它可能有助于 LC 亚型分类和预后。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1b3e/6889617/d1b327695e9c/13148_2019_779_Fig1_HTML.jpg

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