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个体间微生物组的直接和间接转移研究。

Investigation of direct and indirect transfer of microbiomes between individuals.

机构信息

Deakin University, School of Life and Environmental Sciences, Waurn Ponds, Australia.

Victoria Police Forensic Services Centre, Office of the Chief Forensic Scientist, Macleod, Australia; School of Molecular Sciences, La Trobe University, Bundoora, Australia.

出版信息

Forensic Sci Int Genet. 2020 Mar;45:102212. doi: 10.1016/j.fsigen.2019.102212. Epub 2019 Nov 27.

Abstract

The human microbiome encompasses the fungi, bacteria and viruses that live on, within, and immediately surrounding the body. Microbiomes have potential utility in forensic science as an evidentiary tool to link or exclude persons of interest associated with criminal activities. Research has shown the microbiome is individualised, and that personal microbial signatures can be recovered from surfaces such as phones, shoes and fabrics. Before the human microbiome may be used as an investigative tool, further research is required to investigate the utility and potential limitations surrounding microbial profiling. This includes the detectability of microbial transfer between individuals or items, the associated risks (such as contamination events) and the applicability of microbial profiling for forensic purposes. This research aimed to identify whether an individual's distinguishable microbiome could be transferred to another individual and onto substrates, and vice versa. Paper, cotton, and glass surfaces were chosen to represent a range of substrate matrices. The study involved six participants placed into three pairs; participants took part in two modes of transfer. Transfer Mode 1 involved the pair shaking hands, followed by rubbing a substrate in their right hand. Transfer Mode 2 involved individuals rubbing a substrate in their left hand, swapping substrates with their partner and then rubbing the swapped substrate in their left hand. 16S rRNA sequencing was performed on the extracted microbial DNA from participant and substrate samples. Quantitative Insights into Microbial Ecology 2 (QIIME 2) was used for sequence quality control and beta (between-sample) diversity analyses and taxonomic assignment. Principal Coordinate Analysis (PCoA) based on Jaccard distances was visualised through Emperor software to determine the phylogenetic similarity of bacterial communities between participants and among participant pairs. Statistical testing through PERMANOVA revealed significant differences in the Jaccard distances between each participant pair (P < 0.001), highlighting not only the potential distinguishability of skin microbiomes among individuals, but also the clustering effect observed between participant pairs due to the potential transfer of hand-associated microbiomes between individuals. The study demonstrated that transfer of the human skin microbiome had occurred between all participant pairs, regardless of substrate type or mode of transfer.

摘要

人类微生物组包括生活在身体上、内部和周围的真菌、细菌和病毒。微生物组有可能作为一种证据工具,用于法医学,以将与犯罪活动有关的感兴趣的人员联系或排除在外。研究表明,微生物组是个体化的,并且可以从手机、鞋子和织物等表面恢复个人微生物特征。在将人类微生物组用作调查工具之前,需要进行进一步的研究,以调查微生物特征分析的实用性和潜在限制。这包括个体之间或物品之间微生物转移的检测性、相关风险(如污染事件)以及微生物特征分析在法医学中的适用性。本研究旨在确定个体可区分的微生物组是否可以转移到另一个个体和基质上,反之亦然。选择纸张、棉花和玻璃表面来代表一系列基质矩阵。该研究涉及六名参与者分为三组;参与者参与了两种转移模式。转移模式 1 涉及两人握手,然后用右手摩擦基质。转移模式 2 涉及个体用左手摩擦基质,与伴侣交换基质,然后用左手摩擦交换的基质。从参与者和基质样本中提取微生物 DNA 后,进行 16S rRNA 测序。使用定量微生物生态分析 2(QIIME 2)进行序列质量控制和β(样本间)多样性分析和分类分配。基于 Jaccard 距离的主坐标分析(PCoA)通过 Emperor 软件可视化,以确定参与者之间和参与者对之间细菌群落的系统发育相似性。通过 PERMANOVA 进行的统计检验显示,每个参与者对之间的 Jaccard 距离存在显著差异(P < 0.001),这不仅突出了个体之间皮肤微生物组的潜在可区分性,还观察到参与者对之间由于个体之间手部相关微生物组的潜在转移而出现聚类效应。该研究表明,无论基质类型或转移模式如何,人类皮肤微生物组都已在所有参与者对之间转移。

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