Suppr超能文献

基于电子药效团的联合筛选以及PI3激酶与来自天然化合物数据库的潜在抑制剂的对接。

Combined e-pharmacophore based screening and docking of PI3 kinase with potential inhibitors from a database of natural compounds.

作者信息

Eda Sasidhar Reddy, Jinka Rajeswari

机构信息

Department of Biochemistry, Acharya Nagarjuna University, Guntur, Andhra Pradesh, India.

出版信息

Bioinformation. 2019 Oct 20;15(10):709-715. doi: 10.6026/97320630015709. eCollection 2019.

Abstract

Phospho inositide 3-kinase (PI3 K) is a promising target for the design of anticancer drugs and is of significant concern in developing selective isoforms as inhibitors for cancer treatments. The results obtained from the computational analysis were selected based on Glide score and drug binding interaction features. Molecular docking studies and prime MM-GBSA energy calculations showed STOCK1N-77648 with optimal binding features for further consideration. The hydrogen bonding patterns between the top three molecules STOCK1N-91335, STOCK1N-70036 and STOCK1N-77648 and the target protein based on G-scores is reported. The STOCK1N-77648 ligand molecule has protein residue interactions similar to that of interactions with the known inhibitor copanlisib. These data illustrates selectivity of the small molecular PI3 K inhibitors through screening and molecular docking for further in vitro and in vivo consideration.

摘要

磷酸肌醇3-激酶(PI3K)是抗癌药物设计中一个很有前景的靶点,在开发选择性异构体作为癌症治疗抑制剂方面备受关注。从计算分析中获得的结果是根据Glide评分和药物结合相互作用特征选择的。分子对接研究和Prime MM-GBSA能量计算表明,STOCK1N-77648具有最佳结合特征,值得进一步考虑。报道了基于G分数的前三个分子STOCK1N-91335、STOCK1N-70036和STOCK1N-77648与靶蛋白之间的氢键模式。STOCK1N-77648配体分子与已知抑制剂库潘尼西的相互作用具有相似的蛋白质残基相互作用。这些数据通过筛选和分子对接说明了小分子PI3K抑制剂的选择性,以供进一步的体外和体内研究参考。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4916/6900324/21110d52aa56/97320630015709F1.jpg

相似文献

1
Combined e-pharmacophore based screening and docking of PI3 kinase with potential inhibitors from a database of natural compounds.
Bioinformation. 2019 Oct 20;15(10):709-715. doi: 10.6026/97320630015709. eCollection 2019.
3
Virtual Screening of Novel Glucosamine-6-Phosphate Synthase Inhibitors.
Comb Chem High Throughput Screen. 2018;21(3):182-193. doi: 10.2174/1386207321666180330114457.
4
Pharmacophore modeling, multiple docking, and molecular dynamics studies on Wee1 kinase inhibitors.
J Biomol Struct Dyn. 2019 Jul;37(10):2703-2715. doi: 10.1080/07391102.2018.1495576. Epub 2018 Dec 24.
5
Pharmacophore-based virtual screening approach for identification of potent natural modulatory compounds of human Toll-like receptor 7.
J Biomol Struct Dyn. 2019 Nov;37(18):4721-4736. doi: 10.1080/07391102.2018.1559098. Epub 2019 Jan 21.
6
Targeting the NF-κB/IκBα complex via fragment-based E-Pharmacophore virtual screening and binary QSAR models.
J Mol Graph Model. 2019 Jan;86:264-277. doi: 10.1016/j.jmgm.2018.09.014. Epub 2018 Oct 5.
9
Discovery of promising FtsZ inhibitors by E-pharmacophore, 3D-QSAR, molecular docking study, and molecular dynamics simulation.
J Recept Signal Transduct Res. 2019 Apr;39(2):154-166. doi: 10.1080/10799893.2019.1638404. Epub 2019 Jul 29.
10
Molecular docking based design of Dengue NS5 methyltransferase inhibitors.
Bioinformation. 2019 May 30;15(6):394-401. doi: 10.6026/97320630015394. eCollection 2019.

引用本文的文献

本文引用的文献

1
Integrin as a Molecular Target for Anti-cancer Approaches in Lung Cancer.
Anticancer Res. 2019 Feb;39(2):541-548. doi: 10.21873/anticanres.13146.
2
Identification of highly potent and selective PI3Kδ inhibitors.
Bioorg Med Chem Lett. 2017 Jul 1;27(13):2849-2853. doi: 10.1016/j.bmcl.2017.01.077. Epub 2017 Feb 7.
3
A novel PI3K/AKT signaling axis mediates Nectin-4-induced gallbladder cancer cell proliferation, metastasis and tumor growth.
Cancer Lett. 2016 May 28;375(1):179-189. doi: 10.1016/j.canlet.2016.02.049. Epub 2016 Mar 3.
4
Shape based virtual screening and molecular docking towards designing novel pancreatic lipase inhibitors.
Bioinformation. 2015 Dec 31;11(12):535-42. doi: 10.6026/97320630011535. eCollection 2015.
5
Prediction of Absolute Solvation Free Energies using Molecular Dynamics Free Energy Perturbation and the OPLS Force Field.
J Chem Theory Comput. 2010 May 11;6(5):1509-19. doi: 10.1021/ct900587b. Epub 2010 Apr 14.
7
Integrin α5β1, the Fibronectin Receptor, as a Pertinent Therapeutic Target in Solid Tumors.
Cancers (Basel). 2013 Jan 15;5(1):27-47. doi: 10.3390/cancers5010027.
8
Protein and ligand preparation: parameters, protocols, and influence on virtual screening enrichments.
J Comput Aided Mol Des. 2013 Mar;27(3):221-34. doi: 10.1007/s10822-013-9644-8. Epub 2013 Apr 12.
9
Alterations in Cell-Extracellular Matrix Interactions during Progression of Cancers.
Int J Cell Biol. 2012;2012:219196. doi: 10.1155/2012/219196. Epub 2012 Jan 4.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验