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使用线性噪声逼近研究多部位磷酸化链中的化学噪声。

Investigation of chemical noise in multisite phosphorylation chain using linear noise approximation.

机构信息

School of Chemistry, University of Hyderabad, Gachibowli, 500046, Hyderabad, India.

出版信息

Phys Rev E. 2019 Nov;100(5-1):052402. doi: 10.1103/PhysRevE.100.052402.

Abstract

Quantitative and qualitative nature of chemical noise propagation in biochemical reaction networks depend crucially on the topology of the networks. Multisite reversible phosphorylation-dephosphorylation of target proteins is one such recurrently found topology that regulates host of key functions in living cells. Here we analytically calculated the stochasticity in multistep reversible chemical reactions by determining variance of phosphorylated species at the steady state using linear noise approximation to investigate the effect of mass action and Michaelis-Menten kinetics on the noise of phosphorylated species. We probed the dependence of noise on the number of phosphorylation sites and the equilibrium constants of the reaction equilibria to investigate the chemical noise propagation in the multisite phosphorylation chain.

摘要

化学噪声在生化反应网络中的传播具有定量和定性的特征,这主要取决于网络的拓扑结构。靶蛋白的多点可逆磷酸化-去磷酸化就是这样一种常见的拓扑结构,它调节着活细胞中的许多关键功能。在这里,我们通过线性噪声近似法在稳态下确定磷酸化物种的方差,来分析计算多步可逆化学反应的随机性,以研究质量作用和米氏动力学对磷酸化物种噪声的影响。我们研究了噪声与磷酸化位点的数量和反应平衡的平衡常数的依赖关系,以研究多点磷酸化链中的化学噪声传播。

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