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在植物的三个发育生命周期采集的四种植物叶片的转录组数据。

The transcriptome data from the leaves of four species captured at the plant's three developmental life cycles.

作者信息

Subramaniyam Sathiyamoorthy, Bae Seonhwa, Jung Myunghee, Shin Younhee, Oh Jae-Hyeon

机构信息

Research and Development Center, Insilicogen Inc., Yongin-si 16954, Gyeonggi-do, Republic of Korea.

Genomics Division, National Institute of Agricultural Science (NAS), Rural Development Administration (RDA), 370, Nongsaengmyeong-ro, Wansan-gu, Jeonju-si, Jeollabuk-do 54874, Republic of Korea.

出版信息

Data Brief. 2019 Dec 7;28:104955. doi: 10.1016/j.dib.2019.104955. eCollection 2020 Feb.

DOI:10.1016/j.dib.2019.104955
PMID:31890797
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6926128/
Abstract

The plants in the Papaver genus are widely known as Poppies, which is used for ornamental and medicinal purposes, to utilize its plants derived alkaloids and attractive flowers. From this genus, we have sequenced the transcriptomes of four species's ( (two cultivar) (five cultivar) and ) leaves at three developmental stages (i.e., leaf rosette (30 days), elongation and branching (60 days), and blossom and seed formations (90 days)), to elucidate the secondary metabolite biosynthesis gene expression profiles at respective plant stages.

摘要

罂粟属植物广为人知的名称是罂粟,它被用于观赏和药用目的,以利用其植物衍生的生物碱和迷人的花朵。在这个属中,我们对四个物种((两个栽培品种)(五个栽培品种)和)在三个发育阶段(即莲座叶期(30天)、伸长和分枝期(60天)以及开花和种子形成期(90天))的叶片进行了转录组测序,以阐明各个植物阶段次生代谢物生物合成基因的表达谱。

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本文引用的文献

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Self-incompatibility in Papaver pollen: programmed cell death in an acidic environment.罂粟花粉的自交不亲和性:酸性环境中的程序性细胞死亡。
J Exp Bot. 2019 Apr 12;70(7):2113-2123. doi: 10.1093/jxb/ery406.
2
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Int J Mol Sci. 2018 Oct 16;19(10):3192. doi: 10.3390/ijms19103192.
3
The Genome of Opium Poppy Reveals Evolutionary History of Morphinan Pathway.
Genomics Proteomics Bioinformatics. 2018 Dec;16(6):460-462. doi: 10.1016/j.gpb.2018.09.002. Epub 2018 Sep 28.
4
The opium poppy genome and morphinan production.罂粟基因组与吗啡类物质生物合成。
Science. 2018 Oct 19;362(6412):343-347. doi: 10.1126/science.aat4096. Epub 2018 Aug 30.
5
Salmon provides fast and bias-aware quantification of transcript expression.鲑鱼提供快速且无偏倚的转录本表达定量。
Nat Methods. 2017 Apr;14(4):417-419. doi: 10.1038/nmeth.4197. Epub 2017 Mar 6.
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Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic:一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.