• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

对具有和不具有多样底层土壤微生物组的蓝藻土壤表面菌群进行宏转录组测序。

Metatranscriptomic Sequencing of a Cyanobacterial Soil-Surface Consortium with and without a Diverse Underlying Soil Microbiome.

作者信息

Bell Terrence H, Trexler Ryan V, Peng Xin, Huntemann Marcel, Clum Alicia, Foster Brian, Foster Bryce, Roux Simon, Palaniappan Krishnaveni, Varghese Neha, Mukherjee Supratim, Reddy T B K, Daum Chris, Copeland Alex, Ivanova Natalia N, Kyrpides Nikos C, Pennacchio Christa, Eloe-Fadrosh Emiley A, Bruns Mary Ann

机构信息

Department of Plant Pathology and Environmental Microbiology, The Pennsylvania State University, University Park, Pennsylvania, USA

Intercollege Graduate Degree Program in Ecology, Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, Pennsylvania, USA.

出版信息

Microbiol Resour Announc. 2020 Jan 2;9(1):e01361-19. doi: 10.1128/MRA.01361-19.

DOI:10.1128/MRA.01361-19
PMID:31896648
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6940300/
Abstract

Soil surface consortia are easily observed and sampled, allowing examination of their interactions with soil microbiomes. Here, we present metatranscriptomic sequences from Dark Green 1 (DG1), a cyanobacterium-based soil surface consortium, in the presence and absence of an underlying soil microbiome and/or urea.

摘要

土壤表面菌群易于观察和采样,便于研究它们与土壤微生物群落的相互作用。在此,我们展示了来自深绿1号(DG1)的宏转录组序列,DG1是一种基于蓝细菌的土壤表面菌群,分别在有和没有下层土壤微生物群落及/或尿素的情况下获取该序列。

相似文献

1
Metatranscriptomic Sequencing of a Cyanobacterial Soil-Surface Consortium with and without a Diverse Underlying Soil Microbiome.对具有和不具有多样底层土壤微生物组的蓝藻土壤表面菌群进行宏转录组测序。
Microbiol Resour Announc. 2020 Jan 2;9(1):e01361-19. doi: 10.1128/MRA.01361-19.
2
Microbiome shifts and the inhibition of quorum sensing by Black Band Disease cyanobacteria.黑带病蓝细菌引起的微生物群落变化及群体感应抑制
ISME J. 2016 May;10(5):1204-16. doi: 10.1038/ismej.2015.184. Epub 2015 Oct 23.
3
Structure, variation, and assembly of the root-associated microbiomes of rice.水稻根系相关微生物群的结构、变异与组装
Proc Natl Acad Sci U S A. 2015 Feb 24;112(8):E911-20. doi: 10.1073/pnas.1414592112. Epub 2015 Jan 20.
4
Selection, Succession, and Stabilization of Soil Microbial Consortia.土壤微生物群落的选择、演替与稳定
mSystems. 2019 May 14;4(4). doi: 10.1128/mSystems.00055-19. eCollection 2019 Jul-Aug.
5
Plant Microbiomes: Do Different Preservation Approaches and Primer Sets Alter Our Capacity to Assess Microbial Diversity and Community Composition?植物微生物组:不同的保存方法和引物组会改变我们评估微生物多样性和群落组成的能力吗?
Front Plant Sci. 2020 Jul 3;11:993. doi: 10.3389/fpls.2020.00993. eCollection 2020.
6
Metatranscriptomic analysis of diverse microbial communities reveals core metabolic pathways and microbiome-specific functionality.宏转录组分析揭示了不同微生物群落的核心代谢途径和微生物组特有的功能。
Microbiome. 2016 Jan 12;4:2. doi: 10.1186/s40168-015-0146-x.
7
Metaphenomic Responses of a Native Prairie Soil Microbiome to Moisture Perturbations.原生草原土壤微生物群落对水分扰动的元表型反应
mSystems. 2019 Jun 11;4(4):e00061-19. doi: 10.1128/mSystems.00061-19.
8
A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling.用于定量宏基因组和宏转录组功能分析的多源域注释管道。
Microbiome. 2018 Aug 28;6(1):149. doi: 10.1186/s40168-018-0532-2.
9
Temporal variation in community composition, pigmentation, and F(v)/F(m) of desert cyanobacterial soil crusts.沙漠蓝藻土壤结皮的群落组成、色素沉着和F(v)/F(m)的时间变化。
Microb Ecol. 2002 Jan;43(1):13-25. doi: 10.1007/s00248-001-1013-9. Epub 2002 Jan 23.
10
Rhizosphere Microbiomes Modulated by Pre-crops Assisted Plants in Defense Against Plant-Parasitic Nematodes.前茬作物调控的根际微生物群帮助植物抵御植物寄生线虫
Front Microbiol. 2018 Jun 4;9:1133. doi: 10.3389/fmicb.2018.01133. eCollection 2018.

引用本文的文献

1
Best Practices for Successfully Writing and Publishing a Genome Announcement in .成功撰写和发表基因组公告的最佳实践
Microbiol Resour Announc. 2020 Sep 3;9(36):e00763-20. doi: 10.1128/MRA.00763-20.

本文引用的文献

1
The Inherent Conflicts in Developing Soil Microbial Inoculants.发展土壤微生物菌剂的固有矛盾。
Trends Biotechnol. 2019 Feb;37(2):140-151. doi: 10.1016/j.tibtech.2018.11.011. Epub 2018 Dec 23.
2
IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes.IMG/M v.5.0:一个用于微生物基因组和微生物组的集成数据管理和比较分析系统。
Nucleic Acids Res. 2019 Jan 8;47(D1):D666-D677. doi: 10.1093/nar/gky901.
3
The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).美国能源部联合基因组研究所微生物基因组注释流程(MGAP v.4)的标准操作程序。
Stand Genomic Sci. 2015 Oct 26;10:86. doi: 10.1186/s40793-015-0077-y. eCollection 2015.
4
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph.MEGAHIT:通过简洁的 de Bruijn 图实现的超快速单节点解决方案,适用于大型和复杂的宏基因组组装。
Bioinformatics. 2015 May 15;31(10):1674-6. doi: 10.1093/bioinformatics/btv033. Epub 2015 Jan 20.