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基于体外和生物信息学机制的方法来理解镉的致癌性。

In vitro and bioinformatics mechanistic-based approach for cadmium carcinogenicity understanding.

机构信息

Department of Biotechnology and Biosciences, University of Milan - Bicocca, Piazza della Scienza 3, 20126 Milan, Italy.

Dana-Farber Cancer Institute, 450 Brookline Ave, Boston, MA 02215, USA.

出版信息

Toxicol In Vitro. 2020 Jun;65:104757. doi: 10.1016/j.tiv.2020.104757. Epub 2020 Jan 3.

Abstract

Cadmium is a toxic metal able to enter the cells through channels and transport pathways dedicated to essential ions, leading, among others, to the dysregulation of divalent ions homeostasis. Despite its recognized human carcinogenicity, the mechanisms are still under investigation. A powerful tool for mechanistic studies of carcinogenesis is the Cell Transformation Assay (CTA). We have isolated and characterized by whole genome microarray and bioinformatics analysis of differentially expressed genes (DEGs) cadmium-transformed cells from different foci (F1, F2, and F3) at the end of CTA (6 weeks). The systematic analysis of up- and down-regulated transcripts and the comparison of DEGs in transformed cells evidence different functional targets and the complex picture of cadmium-induced transformation. Only 34 in common DEGs are found in cells from all foci, and among these, only 4 genes are jointly up-regulated (Ccl2, Ccl5, IL6 and Spp1), all responsible for cytokines/chemokines coding. Most in common DEGs are down-regulated, suggesting that the switching-off of specific functions plays a major role in this process. In addition, the comparison of dysregulated pathways immediately after cadmium treatment with those in transformed cells provides a valuable means to the comprehension of the overall process.

摘要

镉是一种有毒金属,能够通过通道和专门用于必需离子的运输途径进入细胞,导致二价离子稳态失调等。尽管它被认为具有人类致癌性,但机制仍在研究中。细胞转化分析(CTA)是研究致癌机制的有力工具。我们已经从 CTA(6 周)结束时的不同焦点(F1、F2 和 F3)中分离并通过全基因组微阵列和差异表达基因(DEGs)的生物信息学分析进行了表征镉转化细胞。上调和下调转录本的系统分析以及转化细胞中 DEGs 的比较证明了镉诱导转化的不同功能靶点和复杂情况。仅在所有焦点的细胞中发现 34 个共同的 DEGs,其中只有 4 个基因共同上调(Ccl2、Ccl5、IL6 和 Spp1),均负责细胞因子/趋化因子编码。大多数共同的 DEGs 下调,表明特定功能的关闭在这个过程中起着主要作用。此外,将镉处理后失调途径与转化细胞中的失调途径进行比较,为全面了解整个过程提供了有价值的手段。

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