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墨西哥三个城市人群中的HLA等位基因和单倍型频率:基因组医学方法的遗传多样性

HLA Allele and Haplotype Frequencies in Three Urban Mexican Populations: Genetic Diversity for the Approach of Genomic Medicine.

作者信息

Del Angel-Pablo Alma D, Juárez-Martín Ana Itzel, Pérez-Rubio Gloria, Ambrocio-Ortiz Enrique, López-Flores Luis A, Camarena Angel E, Falfán-Valencia Ramcés

机构信息

HLA Laboratory, Instituto Nacional de Enfermedades Respiratorias Ismael Cosío Villegas, Mexico City 14080, Mexico.

Sección de Estudios de Posgrado e Investigación Escuela Superior de Medicina, Instituto Politécnico Nacional, Mexico City 11340, Mexico.

出版信息

Diagnostics (Basel). 2020 Jan 16;10(1):47. doi: 10.3390/diagnostics10010047.

DOI:10.3390/diagnostics10010047
PMID:31963191
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7168288/
Abstract

Genetic variability defends us against pathogen-driven antigens; human leucocyte antigens (HLA) is the immunological system in charge of this work. The Mexican mestizo population arises mainly from the mixture of three founder populations; Amerindian, Spaniards, and a smaller proportion of the African population. We describe allele and haplotype frequencies of HLA class I (- and ) and class II (- and -), which were analyzed by PCR-SSP in Mexican mestizo from three urban populations of Mexico: Chihuahua-Chihuahua City ( = 88), Mexico City-Tlalpan ( = 330), and Veracruz-Xalapa ( = 84). The variability of the allele HLA class I and class II among the three regions of Mexico are in four alleles: (36.39%), (16.04%), (17.33%), and - (31.47%), these alleles have been previously described in some indigenous populations. We identified 5 haplotypes with a frequency >1%: , , , and . Also, the haplotype was identified in Tlalpan and Xalapa regions. Haplotype was found only in Tlalpan and Chihuahua. In the Xalapa region, the most frequent haplotype was . These alleles and haplotypes have been described in Amerindian populations. Our data are consistent with previous studies and contribute to the analysis of the variability in the Mexican population.

摘要

基因变异性保护我们抵御病原体驱动的抗原;人类白细胞抗原(HLA)是负责此项工作的免疫系统。墨西哥混血人群主要源自三个奠基人群体的混合;美洲印第安人、西班牙人以及较小比例的非洲人群体。我们描述了HLA I类(-和)和II类(-和-)的等位基因及单倍型频率,这些通过聚合酶链反应-序列特异性引物(PCR-SSP)在来自墨西哥三个城市人群的墨西哥混血儿中进行分析:奇瓦瓦州奇瓦瓦市(=88)、墨西哥城特拉尔潘(=330)和韦拉克鲁斯州哈拉帕(=84)。墨西哥三个地区之间HLA I类和II类等位基因的变异性存在于四个等位基因中:(36.39%)、(16.04%)、(17.33%)和-(31.47%),这些等位基因先前已在一些土著人群体中被描述。我们鉴定出频率>1%的5种单倍型:、、、和。此外,单倍型在特拉尔潘和哈拉帕地区被鉴定出来。单倍型仅在特拉尔潘和奇瓦瓦被发现。在哈拉帕地区,最常见的单倍型是。这些等位基因和单倍型已在美洲印第安人群体中被描述。我们的数据与先前的研究一致,并有助于对墨西哥人群体中的变异性进行分析。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecb5/7168288/e9f74114fb19/diagnostics-10-00047-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecb5/7168288/51d997b7b993/diagnostics-10-00047-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecb5/7168288/e9f74114fb19/diagnostics-10-00047-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecb5/7168288/51d997b7b993/diagnostics-10-00047-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ecb5/7168288/e9f74114fb19/diagnostics-10-00047-g002.jpg

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