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贻贝科(软体动物门,双壳纲)中类贻贝防御肽的分子多样性

Molecular Diversity of Mytilin-Like Defense Peptides in Mytilidae (Mollusca, Bivalvia).

作者信息

Greco Samuele, Gerdol Marco, Edomi Paolo, Pallavicini Alberto

机构信息

Department of Life Sciences, University of Trieste, 34127 Trieste, Italy.

National Institute of Oceanography and Applied Geophysics, 34151 Trieste, Italy.

出版信息

Antibiotics (Basel). 2020 Jan 19;9(1):37. doi: 10.3390/antibiotics9010037.

Abstract

The CS-αβ architecture is a structural scaffold shared by a high number of small, cationic, cysteine-rich defense peptides, found in nearly all the major branches of the tree of life. Although several CS-αβ peptides involved in innate immune response have been described so far in bivalve mollusks, a clear-cut definition of their molecular diversity is still lacking, leaving the evolutionary relationship among defensins, mytilins, myticins and other structurally similar antimicrobial peptides still unclear. In this study, we performed a comprehensive bioinformatic screening of the genomes and transcriptomes available for marine mussels (Mytilida), redefining the distribution of mytilin-like CS-αβ peptides, which in spite of limited primary sequence similarity maintain in all cases a well-conserved backbone, stabilized by four disulfide bonds. Variations in the size of the alpha-helix and the two antiparallel beta strand region, as well as the positioning of the cysteine residues involved in the formation of the C1-C5 disulfide bond might allow a certain degree of structural flexibility, whose functional implications remain to be investigated. The identification of mytilins in and spp. revealed that many additional CS-αβ AMPs remain to be formally described and functionally characterized in Mytilidae, and suggest that a more robust scheme should be used for the future classification of such peptides with respect with their evolutionary origin.

摘要

CS-αβ结构是许多小的、阳离子的、富含半胱氨酸的防御肽所共有的结构支架,几乎存在于生命之树的所有主要分支中。尽管到目前为止在双壳贝类中已经描述了几种参与先天免疫反应的CS-αβ肽,但对它们分子多样性的明确界定仍然缺乏,这使得防御素、贻贝素、贻贝霉素和其他结构相似的抗菌肽之间的进化关系仍不明确。在本研究中,我们对海洋贻贝(贻贝目)可用的基因组和转录组进行了全面的生物信息学筛选,重新定义了贻贝素样CS-αβ肽的分布,尽管其一级序列相似性有限,但在所有情况下都保持着一个由四个二硫键稳定的保守主链。α-螺旋和两个反平行β链区域大小的变化,以及参与形成C1-C5二硫键的半胱氨酸残基的位置,可能允许一定程度的结构灵活性,其功能意义仍有待研究。在 和 物种中鉴定出贻贝素,这表明在贻贝科中仍有许多额外的CS-αβ抗菌肽有待正式描述和功能表征,并建议应使用更强大的方案来对这类肽进行基于进化起源的未来分类。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/afe5/7168163/c58956a77d36/antibiotics-09-00037-g001.jpg

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