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采用下一代测序技术鉴定遗传性球形红细胞增多症患者的新突变。

Identification of new mutations in patients with hereditary spherocytosis by next-generation sequencing.

机构信息

Department of Pathology and Lab Medicine, Institute of Hematology and Blood Diseases Hospital, Chinese Academy of Medical Sciences, Tianjin, PR China.

Tianjin Sino-US Diagnostics Co., Ltd., Tianjin, PR China.

出版信息

J Hum Genet. 2020 Apr;65(4):427-434. doi: 10.1038/s10038-020-0724-z. Epub 2020 Jan 24.

DOI:10.1038/s10038-020-0724-z
PMID:31980736
Abstract

Hereditary spherocytosis (HS) is the most common inherited hemolytic anemia characterized by the presence of spherical-shaped erythrocytes on the peripheral blood smear, hemolysis, splenomegaly, jaundice, and gallstones. To date, mutations in at least five genes (ANK1, EPB42, SLC4A1, SPTA1, and SPTB) have been found to be associated with different subtypes of HS. Here, we aim to investigate the presence of novel as well as known mutations in 35 Chinese patients with clinically suspected HS. Whole-exome sequencing (WES) has identified 3 patients with SLC4A1, 16 patients with ANK1, and 16 patients with SPTB mutations, including 5 splicing, 12 nonsense, 9 frameshift, 7 missense, and 1 start-loss mutation, indicating that SPTB and ANK1 are the most frequently mutated genes in Chinese HS patients. Among 34 mutations identified, 21 were novel. Most of SPTB and ANK1 mutations were nonsense (8/16) and frameshift (6/16) mutations. By trio analysis of eight families we have confirmed six de novo mutations. In addition, genotype-phenotype analysis was also performed by comparing clinical manifestations among three groups of patients with SPTB, ANK1, and SLC4A1 mutations. It revealed that patients with ANK1 mutations had a significantly higher level of MCV and MCH but lower percentage of spherocytes compared with those carrying SPTB mutations. In conclusion, our results suggested that molecular diagnosis by next-generation sequencing (NGS) is a fast, economic, and accurate way to detect and identify pathogenic alterations of inherited diseases, highlighting the potential usage of NGS in clinical practice.

摘要

遗传性球形红细胞增多症(HS)是最常见的遗传性溶血性贫血,其特征是外周血涂片上存在球形红细胞、溶血、脾肿大、黄疸和胆石症。迄今为止,已经发现至少五个基因(ANK1、EPB42、SLC4A1、SPTA1 和 SPTB)的突变与不同亚型的 HS 有关。在这里,我们旨在研究 35 名临床疑似 HS 患者中是否存在新的和已知的突变。全外显子组测序(WES)发现 3 名患者存在 SLC4A1 突变,16 名患者存在 ANK1 突变,16 名患者存在 SPTB 突变,包括 5 个剪接、12 个无义、9 个移码、7 个错义和 1 个起始缺失突变,表明 SPTB 和 ANK1 是中国 HS 患者中最常突变的基因。在确定的 34 个突变中,有 21 个是新的。大多数 SPTB 和 ANK1 突变是无义(8/16)和移码(6/16)突变。通过对 8 个家庭的 trio 分析,我们证实了 6 个新生突变。此外,我们还通过比较 SPTB、ANK1 和 SLC4A1 突变患者三组的临床表现进行了基因型-表型分析。结果表明,与携带 SPTB 突变的患者相比,携带 ANK1 突变的患者的 MCV 和 MCH 水平明显更高,但球形红细胞的比例更低。总之,我们的研究结果表明,下一代测序(NGS)的分子诊断是一种快速、经济、准确的方法,可用于检测和识别遗传性疾病的致病改变,突显了 NGS 在临床实践中的潜在应用。

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Changes in expression levels of erythrocyte and immune-related genes are associated with high altitude polycythemia.红细胞和免疫相关基因表达水平的变化与高原红细胞增多症有关。
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