Department of Aquaculture, National Taiwan Ocean University, Keelung 20224, Taiwan; Center of Excellence for the Oceans, National Taiwan Ocean University, Keelung 20224, Taiwan.
Laboratory Biology of Aquatic Organisms and Ecosystems (BOREA), Muséum National d'Histoire Naturelle, CNRS, IRD, Sorbonne Université, Université de Caen Normandie, Université des Antilles, 75231 Paris Cedex 05, France.
Gen Comp Endocrinol. 2020 May 15;291:113395. doi: 10.1016/j.ygcen.2020.113395. Epub 2020 Jan 23.
Duplicated cyp19a1 genes (cyp19a1a encoding aromatase a and cyp19a1b encoding aromatase b) have been identified in an increasing number of teleost species. Cyp19a1a is mainly expressed in the gonads, while cyp19a1b is mainly expressed in the brain, specifically in radial glial cells, as largely investigated by Kah and collaborators. The third round of whole-genome duplication that specifically occurred in the teleost lineage (TWGD or 3R) is likely at the origin of the duplicated cyp19a1 paralogs. In contrast to the situation in other teleosts, our previous studies identified a single cyp19a1 in eels (Anguilla), which are representative species of a basal group of teleosts, Elopomorpha. In the present study, using genome data mining and phylogenetic and synteny analyses, we confirmed that the whole aromatase genomic region was duplicated in eels, with most aromatase-neighboring genes being conserved in duplicate in eels, as in other teleosts. These findings suggest that specific gene loss of one of the 3R-duplicated cyp19a1 paralogs occurred in Elopomorpha after TWGD. Similarly, a single cyp19a1 gene was found in the arowana, which is a representative species of another basal group of teleosts, Osteoglossomorpha. In eels, the single cyp19a1 is expressed in both the brain and the gonads, as observed for the single CYP19A1 gene present in other vertebrates. The results of phylogenetic, synteny, closest neighboring gene, and promoter structure analyses showed that the single cyp19a1 of the basal teleosts shared conserved properties with both teleost cyp19a1a and cyp19a1b paralogs, which did not allow us to conclude which of the 3R-duplicated paralogs (cyp19a1a or cyp19a1b) was lost in Elopomorpha. Elopomorpha and Osteoglossomorpha cyp19a1 genes exhibited preserved ancestral functions, including expression in both the gonad and brain. We propose that the subfunctionalization of the 3R-duplicated cyp19a1 paralogs expressed specifically in the gonad or brain occurred in Clupeocephala, after the split of Clupeocephala from Elopomorpha and Osteoglossomorpha, which represented a driving force for the conservation of both 3R-duplicated paralogs in all extant Clupeocephala. In contrast, the functional redundancy of the undifferentiated 3R-duplicated cyp19a1 paralogs in elopomorphs and osteoglossomorphs would have favored the loss of one 3R paralog in basal teleosts.
在越来越多的硬骨鱼类物种中,已经鉴定出重复的 cyp19a1 基因(编码芳香酶 a 的 cyp19a1a 和编码芳香酶 b 的 cyp19a1b)。Cyp19a1a 主要在性腺中表达,而 cyp19a1b 主要在大脑中表达,尤其是在放射状胶质细胞中,这在很大程度上是由 Kah 及其同事研究的。在硬骨鱼类中特异性发生的第三次全基因组复制(TWGD 或 3R)可能是重复的 cyp19a1 旁系同源物的起源。与其他硬骨鱼类的情况不同,我们之前的研究在鳗鱼(Anguilla)中鉴定出单个 cyp19a1,鳗鱼是硬骨鱼类的一个基础群代表,Elopomorpha。在本研究中,通过基因组数据挖掘和系统发育及共线性分析,我们证实了鳗鱼中整个芳香酶基因组区域发生了复制,大多数芳香酶邻近基因在鳗鱼中以重复的形式保留,与其他硬骨鱼类相同。这些发现表明,在 TWGD 之后,Elopomorpha 中发生了 3R 重复的 cyp19a1 旁系同源物之一的特异性基因丢失。同样,在另一个硬骨鱼类基础群 Osteoglossomorpha 的代表性物种金龙鱼中,也发现了单个 cyp19a1 基因。在鳗鱼中,单个 cyp19a1 在大脑和性腺中都有表达,与其他脊椎动物中存在的单个 CYP19A1 基因相同。系统发育、共线性、最近邻基因和启动子结构分析的结果表明,基础硬骨鱼类的单个 cyp19a1 与两种硬骨鱼类的 cyp19a1a 和 cyp19a1b 旁系同源物具有保守特性,这使得我们无法确定 Elopomorpha 中丢失了哪一个 3R 重复的旁系同源物(cyp19a1a 或 cyp19a1b)。Elopomorpha 和 Osteoglossomorpha 的 cyp19a1 基因表现出保存的祖先功能,包括在性腺和大脑中的表达。我们提出,在 Clupeocephala 中,3R 重复的 cyp19a1 旁系同源物的亚功能化特异性发生在性腺或大脑中,这发生在 Clupeocephala 从 Elopomorpha 和 Osteoglossomorpha 分裂之后,这是 Clupeocephala 所有现存物种中两个 3R 重复旁系同源物保守的驱动力。相比之下,Elopomorpha 和 Osteoglossomorpha 中未分化的 3R 重复 cyp19a1 旁系同源物的功能冗余会导致基础硬骨鱼类中一个 3R 旁系同源物的丢失。