Centre for Cardiovascular Surgery and Transplantation, Brno, Czech Republic.
Faculty of Medicine, Masaryk University, Brno, Czech Republic.
J Clin Immunol. 2020 Apr;40(3):435-446. doi: 10.1007/s10875-020-00753-2. Epub 2020 Jan 25.
Hereditary angioedema (HAE) is a rare autosomal dominant life-threatening disease characterized by low levels of C1 inhibitor (type I HAE) or normal levels of ineffective C1 inhibitor (type II HAE), typically occurring as a consequence of a SERPING1 mutation. In some cases, a causal mutation remains undetected after using a standard molecular genetic analysis.
Here we show a long methodological way to the final discovery of c.1029 + 384A > G, a novel deep intronic mutation in intron 6 which is responsible for HAE type I in a large family and has not been identified by a conventional diagnostic approach. This mutation results in de novo donor splice site creation and subsequent pseudoexon inclusion, the mechanism firstly described to occur in SERPING1 in this study. We additionally discovered that the proximal part of intron 6 is a region potentially prone to pseudoexon-activating mutations, since natural alternative exons and additional cryptic sites occur therein. Indeed, we confirmed the existence of at least two different alternative exons in this region not described previously.
In conclusion, our results suggest that detecting aberrant transcripts, which are often low abundant because of nonsense-mediated decay, requires a modified methodological approach. We suggest SERPING1 intron 6 sequencing and/or tailored mRNA analysis to be routinely used in HAE patients with no mutation identified in the coding sequence.
遗传性血管性水肿(HAE)是一种罕见的常染色体显性致命性疾病,其特征是 C1 抑制剂水平降低(I 型 HAE)或无效 C1 抑制剂水平正常(II 型 HAE),通常是由于 SERPING1 突变引起的。在某些情况下,使用标准分子遗传学分析后,仍然无法检测到因果突变。
在这里,我们展示了一种漫长的方法学途径,最终发现了 c.1029 + 384A > G,这是一种新型的 6 号内含子深内含子突变,该突变导致一个大型家族中的 I 型 HAE,并且通过常规诊断方法无法识别。该突变导致新的供体位点剪接,随后内含子包含假外显子,这是本研究中首次描述的 SERPING1 中发生的机制。我们还发现,6 号内含子的近端部分是一个潜在易发生假外显子激活突变的区域,因为其中存在天然的替代外显子和额外的隐匿剪接位点。事实上,我们证实了在该区域中至少存在两个以前未描述的不同的替代外显子。
总之,我们的研究结果表明,检测异常转录本通常需要一种改良的方法学方法,因为异常转录本由于无意义介导的衰变而往往含量较低。我们建议在编码序列中未发现突变的 HAE 患者中常规使用 SERPING1 内含子 6 测序和/或定制的 mRNA 分析。