College of Science, Health, Engineering and Education, Murdoch University, Perth, Australia.
Faculty of Engineering and Mathematical Sciences, The University of Western Australia, Perth, Australia.
Acta Physiol (Oxf). 2020 Apr;228(4):e13450. doi: 10.1111/apha.13450. Epub 2020 Feb 14.
Computational models have made a major contribution to the field of physiology. As the complexity of our understanding of biological systems expands, the need for computational methods only increases. But collaboration between experimental physiologists and computational modellers (ie theoretical physiologists) is not easy. One of the major challenges is to break down the barriers created by differences in vocabulary and approach between the two disciplines. In this review, we have two major aims. Firstly, we wish to contribute to the effort to break down these barriers and so encourage more interdisciplinary collaboration. So, we begin with a "primer" on the ways in which computational models can help us understand physiology and pathophysiology. Second, we aim to provide an update of recent efforts in one specific area of physiology, renal oxygenation. This work is shedding new light on the causes and consequences of renal hypoxia. But as importantly, computational modelling is providing direction for experimental physiologists working in the field of renal oxygenation by: (a) generating new hypotheses that can be tested in experimental studies, (b) allowing experiments that are technically unfeasible to be simulated in silico, or variables that cannot be measured experimentally to be estimated, and (c) providing a means by which the quality of experimental data can be assessed. Critically, based on our experience, we strongly believe that experimental and theoretical physiology should not be seen as separate exercises. Rather, they should be integrated to permit an iterative process between modelling and experimentation.
计算模型为生理学领域做出了重大贡献。随着我们对生物系统复杂性理解的不断扩展,对计算方法的需求只会增加。但是,实验生理学家和计算建模师(即理论生理学家)之间的合作并不容易。其中一个主要挑战是打破两个学科之间词汇和方法差异造成的障碍。在这篇综述中,我们有两个主要目标。首先,我们希望为打破这些障碍做出贡献,从而鼓励更多的跨学科合作。因此,我们从计算模型如何帮助我们理解生理学和病理生理学的“入门”开始。其次,我们旨在提供生理学一个特定领域——肾脏氧合作用的最新研究进展。这项工作为肾脏缺氧的原因和后果提供了新的认识。但同样重要的是,计算建模通过以下方式为从事肾脏氧合作用的实验生理学家提供了方向:(a) 生成可在实验研究中测试的新假设;(b) 允许在计算机上模拟在技术上不可行的实验,或估计无法在实验中测量的变量;(c) 提供一种评估实验数据质量的方法。至关重要的是,根据我们的经验,我们强烈认为实验和理论生理学不应被视为独立的活动。相反,它们应该整合起来,以便在建模和实验之间进行迭代过程。