从两名患有长时间菌血症的住院患者中分离出的四株带有vanA基因及两种达托霉素耐药性突变的耐万古霉素屎肠球菌的全基因组序列。
Complete Genome Sequences of Four Isolates of Vancomycin-Resistant Enterococcus faecium with the Gene and Two Daptomycin Resistance Mutations, Obtained from Two Inpatients with Prolonged Bacteremia.
作者信息
Jenjaroenpun Piroon, Wongsurawat Thidathip, Udaondo Zulema, Anderson Courtney, Lopez James, Mohan Meera, Tytarenko Ruslana, Walker Brian, Nookaew Intawat, Ussery David, Kothari Atul, Jun Se-Ran
机构信息
Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, Arkansas, USA.
Division of Infectious Diseases, University of Arkansas for Medical Sciences, Little Rock, Arkansas, USA.
出版信息
Microbiol Resour Announc. 2020 Feb 6;9(6):e01380-19. doi: 10.1128/MRA.01380-19.
Abstract
Here, we present complete genome sequences of four isolates, obtained from two patients with apparent vancomycin-resistant bacteremia; these isolates also carried two mutations known to be associated with daptomycin resistance. Sequences were obtained using and hybrid assembly of Oxford Nanopore and Illumina sequence data.
摘要
在此，我们展示了从两名患有明显耐万古霉素菌血症的患者身上分离出的四个菌株的完整基因组序列；这些菌株还携带两个已知与达托霉素耐药性相关的突变。序列是通过牛津纳米孔和Illumina序列数据的混合组装获得的。
相似文献
1
Complete Genome Sequences of Four Isolates of Vancomycin-Resistant Enterococcus faecium with the Gene and Two Daptomycin Resistance Mutations, Obtained from Two Inpatients with Prolonged Bacteremia.从两名患有长时间菌血症的住院患者中分离出的四株带有vanA基因及两种达托霉素耐药性突变的耐万古霉素屎肠球菌的全基因组序列。
Microbiol Resour Announc. 2020 Feb 6;9(6):e01380-19. doi: 10.1128/MRA.01380-19.
2
Australian Group on Antimicrobial Resistance (AGAR) Australian Enterococcal Surveillance Outcome Program (AESOP) Bloodstream Infection Annual Report 2022.澳大利亚抗菌药物耐药性小组（AGAR）澳大利亚肠球菌监测结果项目（AESOP）2022年血流感染年度报告。
Commun Dis Intell (2018). 2023 Nov 16;47. doi: 10.33321/cdi.2023.47.68.
3
Two Cases of Vancomycin-Resistant Bacteremia With Development of Daptomycin-Resistant Phenotype and its Detection Using Oxford Nanopore Sequencing.两例耐万古霉素菌血症伴达托霉素耐药表型的出现及其牛津纳米孔测序检测
Open Forum Infect Dis. 2020 May 23;7(6):ofaa180. doi: 10.1093/ofid/ofaa180. eCollection 2020 Jun.
4
Detection of Vancomycin-Resistant Endocarditis After Clearance of Vancomycin-Sensitive Bacteremia.清除 vancomycin-susceptible 菌血症后检测 vancomycin-resistant 心内膜炎。
Microb Drug Resist. 2022 Mar;28(3):382-385. doi: 10.1089/mdr.2021.0233. Epub 2021 Dec 16.
5
Utilizing genomic analyses to investigate the first outbreak of vanA vancomycin-resistant Enterococcus in Australia with emergence of daptomycin non-susceptibility.利用基因组分析研究澳大利亚首例 vanA 万古霉素耐药肠球菌爆发，出现达托霉素耐药性。
J Med Microbiol. 2019 Mar;68(3):303-308. doi: 10.1099/jmm.0.000916. Epub 2019 Jan 21.
6
Breakthrough daptomycin-, linezolid-, vancomycin-resistant bacteremia during protracted daptomycin therapy: A case report.长期使用达托霉素治疗期间出现对达托霉素、利奈唑胺、万古霉素耐药的突破性菌血症：一例报告
IDCases. 2022 Aug 4;29:e01593. doi: 10.1016/j.idcr.2022.e01593. eCollection 2022.
7
Daptomycin Resistance Occurs Predominantly in -Type Vancomycin-Resistant in Australasia and Is Associated With Heterogeneous and Novel Mutations.在澳大拉西亚地区，达托霉素耐药主要发生在耐万古霉素的菌株中，并且与异质性和新的突变相关。
Front Microbiol. 2021 Oct 20;12:749935. doi: 10.3389/fmicb.2021.749935. eCollection 2021.
8
Insertion sequences and other mobile elements associated with antibiotic resistance genes in isolates from an inpatient with prolonged bacteraemia.携带抗生素耐药基因的插入序列和其他移动元件与住院患者长时间菌血症分离株相关。
Microb Genom. 2022 Aug;8(8). doi: 10.1099/mgen.0.000855.
9
Characterization of a Tigecycline-, Linezolid- and Vancomycin-Resistant Clinical Enteroccoccus faecium Isolate, Carrying vanA and vanB Genes.一株携带vanA和vanB基因、对替加环素、利奈唑胺和万古霉素耐药的临床屎肠球菌分离株的特性分析
Infect Dis Ther. 2023 Nov;12(11):2545-2565. doi: 10.1007/s40121-023-00881-3. Epub 2023 Oct 11.
10
Rapid in vivo development of resistance to daptomycin in vancomycin-resistant Enterococcus faecium due to genomic alterations.万古霉素耐药粪肠球菌因基因组改变而迅速产生对达托霉素的耐药性。
FEMS Microbiol Lett. 2022 Aug 13;369(1). doi: 10.1093/femsle/fnac063.
引用本文的文献
1
Whole-Genome Sequence of a Clinical Enterococcus gallinarum Strain in a Positive Hemoculture from Siriraj Hospital, Thailand.泰国诗里拉吉医院一份血培养阳性的鸡肠球菌临床菌株的全基因组序列
Microbiol Resour Announc. 2022 Dec 15;11(12):e0060522. doi: 10.1128/mra.00605-22. Epub 2022 Nov 1.
2
The Role of N-Methyladenosine in the Promotion of Hepatoblastoma: A Critical Review.N6-甲基腺苷在促进肝癌中的作用：一项关键性综述。
Cells. 2022 Apr 30;11(9):1516. doi: 10.3390/cells11091516.
3
Complete Genome Sequence of Schaalia turicensis Strain CT001, Isolated from a Patient with Gonococcal Urethritis in Thailand.从泰国一名淋菌性尿道炎患者中分离出的图里希 Schaalia 菌 CT001 菌株的全基因组序列
Microbiol Resour Announc. 2021 Dec 16;10(50):e0083621. doi: 10.1128/MRA.00836-21.
4
Complete Genome Sequence of Neisseria gonorrhoeae Multilocus Sequence Type ST7363 Isolated from Thailand.从泰国分离出的淋病奈瑟菌多位点序列类型ST7363的全基因组序列
Microbiol Resour Announc. 2021 Oct 14;10(41):e0057321. doi: 10.1128/MRA.00573-21.
本文引用的文献
1
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database.CARD 2020：利用综合抗生素耐药数据库进行抗生素耐药组监测。
Nucleic Acids Res. 2020 Jan 8;48(D1):D517-D525. doi: 10.1093/nar/gkz935.
2
Draft Genome Sequences of 48 Vancomycin-Resistant Enterococcus faecium Strains Isolated from Inpatients with Bacteremia and Urinary Tract Infection.从患有菌血症和尿路感染的住院患者中分离出的48株耐万古霉素粪肠球菌的基因组序列草图
Microbiol Resour Announc. 2019 Apr 11;8(15):e00222-19. doi: 10.1128/MRA.00222-19.
3
Complete Genome and Plasmid Sequences of Escherichia coli Type Strain ATCC 11775.大肠杆菌模式菌株ATCC 11775的全基因组和质粒序列
Microbiol Resour Announc. 2019 Feb 28;8(9). doi: 10.1128/MRA.00046-19. eCollection 2019 Feb.
4
Evolution and mutations predisposing to daptomycin resistance in vancomycin-resistant Enterococcus faecium ST736 strains.肠球菌属粪肠球菌 ST736 株致万古霉素耐药的进化和突变。
PLoS One. 2018 Dec 21;13(12):e0209785. doi: 10.1371/journal.pone.0209785. eCollection 2018.
5
fastp: an ultra-fast all-in-one FASTQ preprocessor.fastp：一个超快速的一体化 FASTQ 预处理程序。
Bioinformatics. 2018 Sep 1;34(17):i884-i890. doi: 10.1093/bioinformatics/bty560.
6
Complete genomic and transcriptional landscape analysis using third-generation sequencing: a case study of Saccharomyces cerevisiae CEN.PK113-7D.利用第三代测序技术进行全基因组和转录组全景分析：以酿酒酵母 CEN.PK113-7D 为例。
Nucleic Acids Res. 2018 Apr 20;46(7):e38. doi: 10.1093/nar/gky014.
7
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器：从短读长和长读长测序数据中解析细菌基因组组装结果
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
8
Canu: scalable and accurate long-read assembly via adaptive -mer weighting and repeat separation.Canu：通过自适应k-mer加权和重复序列分离实现可扩展且准确的长读长序列拼接
Genome Res. 2017 May;27(5):722-736. doi: 10.1101/gr.215087.116. Epub 2017 Mar 15.
9
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
10
Global Emergence and Dissemination of Enterococci as Nosocomial Pathogens: Attack of the Clones?肠球菌作为医院病原体的全球出现与传播：克隆体的侵袭？
Front Microbiol. 2016 May 26;7:788. doi: 10.3389/fmicb.2016.00788. eCollection 2016.
Zotero 插件