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CYP3A4 和 CYP19A1 催化的睾酮和二氢睾酮羟化的区域和立体选择性的机制见解。

Mechanistic Insights into the Regio- and Stereoselectivities of Testosterone and Dihydrotestosterone Hydroxylation Catalyzed by CYP3A4 and CYP19A1.

机构信息

Department of Theoretical Chemistry and Biology, KTH Royal Institute of Technology, Roslagstullsbacken 15, 10691, Stockholm, Sweden.

Shanghai Key Laboratory of New Drug Design, East China University of Science and Technology, Meilong Road 130, 200237, Shanghai, P.R. China.

出版信息

Chemistry. 2020 May 15;26(28):6214-6223. doi: 10.1002/chem.201905272. Epub 2020 Apr 28.

Abstract

The hydroxylation of nonreactive C-H bonds can be easily catalyzed by a variety of metalloenzymes, especially cytochrome P450s (P450s). The mechanism of P450 mediated hydroxylation has been intensively studied, both experimentally and theoretically. However, understanding the regio- and stereoselectivities of substrates hydroxylated by P450s remains a great challenge. Herein, we use a multi-scale modeling approach to investigate the selectivity of testosterone (TES) and dihydrotestosterone (DHT) hydroxylation catalyzed by two important P450s, CYP3A4 and CYP19A1. For CYP3A4, two distinct binding modes for TES/DHT were predicted by dockings and molecular dynamics simulations, in which the experimentally identified sites of metabolism of TES/DHT can access to the catalytic center. The regio- and stereoselectivities of TES/DHT hydroxylation were further evaluated by quantum mechanical and ONIOM calculations. For CYP19A1, we found that sites 1β, 2β and 19 can access the catalytic center, with the intrinsic reactivity 2β>1β>19. However, our ONIOM calculations indicate that the hydroxylation is favored at site 19 for both TES and DHT, which is consistent with the experiments and reflects the importance of the catalytic environment in determining the selectivity. Our study unravels the mechanism underlying the selectivity of TES/DHT hydroxylation mediated by CYP3A4 and CYP19A1 and is helpful for understanding the selectivity of other substrates that are hydroxylated by P450s.

摘要

非反应性 C-H 键的羟化作用可以很容易地被各种金属酶催化,特别是细胞色素 P450s(P450s)。P450 介导的羟化作用的机制已经在实验和理论上进行了深入研究。然而,理解 P450 催化的底物的区域和立体选择性仍然是一个巨大的挑战。在此,我们使用多尺度建模方法研究了两种重要的 P450,CYP3A4 和 CYP19A1 催化的睾酮(TES)和二氢睾酮(DHT)羟化的选择性。对于 CYP3A4,通过对接和分子动力学模拟预测了 TES/DHT 的两种不同的结合模式,其中 TES/DHT 的代谢实验确定的部位可以进入催化中心。通过量子力学和 ONIOM 计算进一步评估了 TES/DHT 羟化的区域和立体选择性。对于 CYP19A1,我们发现 1β、2β 和 19 位可以进入催化中心,其中 2β 的固有反应性>1β>19。然而,我们的 ONIOM 计算表明,对于 TES 和 DHT,羟化在 19 位是有利的,这与实验一致,反映了催化环境在确定选择性方面的重要性。我们的研究揭示了 CYP3A4 和 CYP19A1 介导的 TES/DHT 羟化选择性的机制,有助于理解其他被 P450 羟化的底物的选择性。

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