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胶态氧化石墨烯增强脂肪酶的活性并防止其氧化损伤:物理化学和分子动力学研究的见解。

Colloidal graphene oxide enhances the activity of a lipase and protects it from oxidative damage: Insights from physicochemical and molecular dynamics investigations.

机构信息

Protein Research Center, Shahid Beheshti University, G.C, Tehran, Iran.

Protein Research Center, Shahid Beheshti University, G.C, Tehran, Iran; Nanobiotechnology Laboratory, The Faculty of New Technologies Engineering (NTE), Shahid Beheshti University, G.C., Tehran, Iran.

出版信息

J Colloid Interface Sci. 2020 May 1;567:285-299. doi: 10.1016/j.jcis.2020.02.010. Epub 2020 Feb 5.

DOI:10.1016/j.jcis.2020.02.010
PMID:32062491
Abstract

Physical adsorption of lipase from Thermomyces lanuginosus onto single-layer sheets of graphene oxide (GO) was studied using the response surface methodology to evaluate the physicochemical factors - temperature, pH, ionic strength, and concentration - affecting the enzymatic activity and the immobilization efficiency. The immobilization efficiency and the activity of the enzyme were inversely proportional to each other. Specifically, higher pH values increased the immobilization efficacy, but produced changes in the aggregation state and secondary structure of the enzyme, thus decreasing its activity. Lower pH values, in turn, reduced the immobilization efficacy, but increased the activity of the adsorbed lipase. The adsorbed and the free lipase were followed during 600 ns and 3.5 μs, respectively, in molecular dynamics (MD) simulations. MD trajectories showed that irreversible adsorption freezes the enzyme in a state with a correctly opened catalytic cavity, while the active site remains without a direct interaction with the GO adsorbent. In contrast to the interfacial activation of lipases in a hydrophobic environment, where the catalytic pocket attaches to the hydrophobic surface, the adsorption onto GO made the active site of the lipase accessible by altering the tertiary structure of the enzyme, leading to a higher catalytic efficiency. Experimental investigations confirmed that the physical adsorption onto GO induces tertiary structure changes in the lipase and protects it from HO by accepting the oxidative damage upon itself. In summary, the physical adsorption of the lipase onto GO is mainly affected by pH and could possibly provide a spreadable and robust catalytic interface for biotechnological applications.

摘要

脂肪酶从Thermomyces lanuginosus 到单层氧化石墨烯(GO)的物理吸附采用响应面法来评估影响酶活性和固定化效率的物理化学因素 - 温度、pH 值、离子强度和浓度。固定化效率和酶的活性成反比。具体而言,较高的 pH 值增加了固定化效果,但改变了酶的聚集状态和二级结构,从而降低了其活性。较低的 pH 值,反过来,降低了固定化效率,但增加了吸附脂肪酶的活性。在分子动力学(MD)模拟中,分别跟踪了吸附和游离脂肪酶 600ns 和 3.5μs。MD 轨迹表明,不可逆吸附将酶冻结在具有正确打开的催化腔的状态,而活性位点仍然与 GO 吸附剂没有直接相互作用。与在疏水环境中脂肪酶的界面活化不同,其中催化口袋附着在疏水面上,吸附到 GO 上通过改变酶的三级结构使脂肪酶的活性位点变得可用,从而提高了催化效率。实验研究证实,GO 上的物理吸附会导致脂肪酶的三级结构发生变化,并通过自身接受氧化损伤来保护它免受 HO 的影响。总之,脂肪酶在 GO 上的物理吸附主要受 pH 值影响,并可能为生物技术应用提供可扩展和稳健的催化界面。

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