i3S - Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Porto, Portugal.
Ipatimup - Institute of Molecular Pathology and Immunology, University of Porto, Porto, Portugal.
J Med Genet. 2021 Jan;58(1):1-11. doi: 10.1136/jmedgenet-2019-106346. Epub 2020 Feb 17.
Familial intestinal gastric cancer (FIGC) remains genetically unexplained and without testing/clinical criteria. Herein, we characterised the age of onset and disease spectrum of 50 FIGC families and searched for genetic causes potentially underlying a monogenic or an oligogenic/polygenic inheritance pattern.
Normal and tumour DNA from 50 FIGC probands were sequenced using Illumina custom panels on MiSeq, and their respective germline and somatic landscapes were compared with corresponding landscapes from sporadic intestinal gastric cancer (SIGC) and hereditary diffuse gastric cancer cohorts.
The most prevalent phenotype in FIGC families was gastric cancer, detected in 138 of 208 patients (50 intestinal gastric cancer probands and 88 unknown gastric cancer histology relatives), followed by colorectal and breast cancers. After excluding benign and intronic variants lacking impact in splicing, 12 rare high-quality variants were found exclusively in 11 FIGC probands. Only two probands carried potentially deleterious variants, but lacked somatic second-hits, weakly supporting the monogenic hypothesis for FIGC. However, FIGC probands developed gastric cancer at least 10 years earlier and carried more germline common variants than SIGC (p=4.5E-03); FIGC and SIGC could be distinguished by specific germline and somatic variant profiles; there was an excess of FIGC tumours presenting microsatellite instability (38%); and FIGC tumours displayed significantly more somatic common variants than SIGC tumours (p=4.2E-06).
This study proposed the first data-driven testing criteria for FIGC families, and supported FIGC as a genetically determined, likely polygenic, gastric cancer-predisposing disease, with earlier onset and distinct from patients with SIGC at the germline and somatic levels.
家族性肠胃型胃癌(FIGC)在遗传上仍未得到解释,也没有检测/临床标准。在此,我们对 50 个 FIGC 家族的发病年龄和疾病谱进行了特征描述,并寻找可能潜在的单基因或寡基因/多基因遗传模式的遗传原因。
使用 Illumina 定制面板在 MiSeq 上对 50 个 FIGC 先证者的正常和肿瘤 DNA 进行测序,并将其相应的种系和体细胞图谱与散发性肠胃型胃癌(SIGC)和遗传性弥漫性胃癌队列的相应图谱进行比较。
FIGC 家族中最常见的表型是胃癌,在 208 名患者中的 138 名中检测到(50 名肠胃型胃癌先证者和 88 名未知胃癌组织学亲属),其次是结直肠癌和乳腺癌。排除良性和不影响剪接的内含子变体后,仅在 11 个 FIGC 先证者中发现了 12 个罕见的高质量变体。只有两个先证者携带潜在的有害变体,但缺乏体细胞二次打击,这微弱地支持 FIGC 的单基因假说。然而,FIGC 先证者的胃癌发病年龄至少早了 10 年,并且携带的种系常见变体比 SIGC 多(p=4.5E-03);FIGC 和 SIGC 可以通过特定的种系和体细胞变体谱来区分;存在大量 FIGC 肿瘤表现出微卫星不稳定性(38%);并且 FIGC 肿瘤的体细胞常见变体明显多于 SIGC 肿瘤(p=4.2E-06)。
本研究提出了 FIGC 家族的第一个数据驱动的测试标准,并支持 FIGC 作为一种遗传性确定的、可能是多基因的、胃癌易感疾病,其发病年龄更早,与 SIGC 患者在种系和体细胞水平上存在明显差异。