Chair and Department of Medical Microbiology, Medical University of Lublin, Lublin, Poland.
Biological Threats Identification and Countermeasure Centre, Military Institute of Hygiene and Epidemiology, Puławy, Poland.
Braz J Microbiol. 2020 Jun;51(2):685-689. doi: 10.1007/s42770-020-00236-x. Epub 2020 Feb 17.
Despite its low virulence potential and a commensal lifestyle as a member of the human skin microbiota, Brevibacterium casei has been increasingly reported as an opportunistic pathogen, especially in immunocompromised patients. Here, we present the draft genome sequence of the S51 strain isolated from a bloodstream infection. To the best of the authors' knowledge, this is the first report of the draft genome sequence of the B. casei strain isolated from the clinical infection. The strain was identified using phenotypic and molecular methods and subsequently sequenced using the next-generation sequencing. The draft whole genome was assembled de novo, automatically annotated by Rapid Annotations using Subsystems Technology (RAST) server and scrutinized to predict the presence of virulence, resistance, and stress response proteins. The genome size of the S51 strain was 3,743,532 bp and an average G+C content was 68.3%. The predicted genes included 48 genes involved in resistance to antibiotics (including vancomycin, fluoroquinolones, and beta-lactams) and toxic compounds (heavy metals), 16 genes involved in invasion and intracellular resistance (Mycobacterium virulence operons), and 94 genes involved in stress response (osmotic, oxidative stress, cold and heat shock). ResFinder has indicated the presence of a beta-lactamase, and a phenotypic analysis showed resistance to penicillin. This whole-genome NGS project for the S51strain has been deposited at EMBL/GenBank under the accession no. QNGF00000000.
尽管短小棒杆菌的毒力潜力较低,并且作为人类皮肤微生物群落的共生体生活方式,但它已被越来越多地报道为机会性病原体,特别是在免疫功能低下的患者中。在这里,我们介绍了从血流感染中分离出的 S51 株的基因组草图序列。据作者所知,这是首次报道从临床感染中分离出的短小棒杆菌菌株的基因组草图序列。该菌株是使用表型和分子方法鉴定的,然后使用下一代测序进行测序。通过从头组装草图全基因组,使用 Rapid Annotations using Subsystems Technology (RAST) 服务器自动注释,并仔细检查以预测毒力、耐药性和应激反应蛋白的存在。S51 株的基因组大小为 3,743,532 bp,平均 G+C 含量为 68.3%。预测的基因包括 48 个与抗生素(包括万古霉素、氟喹诺酮类和β-内酰胺类)和有毒化合物(重金属)耐药性相关的基因、16 个与入侵和细胞内耐药性相关的基因(分枝杆菌毒力操纵子)以及 94 个与应激反应相关的基因(渗透、氧化应激、冷和热休克)。ResFinder 表明存在β-内酰胺酶,表型分析显示对青霉素耐药。S51 株的全基因组 NGS 项目已在 EMBL/GenBank 中以 QNGF00000000 号提交。